Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01366 GTTTCTTTTCAAGGTAGAAAAGAAGAAAATAAAAAAAAAAAAGTAAAGTGCAGAAGTAGTACTCTACTGAAACCCAATAATACAAGGCACTCATGCTTAGGTCCGCGTGCTTTGATGCAAACTGATGGCCTTTAATTTGGTTGCTTTGTGCGAAGCCAAGCCCCACCCTTTGAAAGAAAGATCTGCACTGTGCCTTTTTCACAGCTTTTGGTCTGCTTGCTTCGATTCTTTTTTTTCTCATAGACATGAGATTCTCATGTAAATGTTGATGAAGGAGTAGGGAGACTAGAGCTTTTGTTTGGTGGGGATGCTACTTCTGAATTCAAGACGTACAAACACGTCTTCCTCTTGTGGTTTGTTGAAAGACGTAGAGAGCGGTGCAGCATAGTATGGCTTCCGTAGAAGAAAAGATTAAAACTGCAGGAGGCATGGTTGTTGGGGCTCAAACTCTTGTTGCTGAGATGAAACTGCTCAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCTGGCCCCCTTGTGTCATTGCCTCAGGTTGGGAGCCTTGTATTTTACTTCCCTCAGGGCCATAGTGAGCAGGTTGCAGCTTCTACTAGAAGAACCGCAACCTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAATTGCTGTGCCAAGTACAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCTCTGAATTCTGAAAAAGAAGTTTTTCCCATCTCTGATTTCGGGCTAAAGCACAGTAAACACCCCAGTGAGTTCTTCTGTAAAACTTTGACTGCTAGTGACACTAGCACACATGGTGGTTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTTTTTCCTCCATTGGTATGGCTATACTCTGTAGCACTAGCTGGTTGCAAATCATCTGGGTTTTTTTTGTTGGATTACACAATTCAACCCCCTACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATGCCTGGACATTTAGACATATATACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTTGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCACAATTGCGAGTTGGGGTGAGGCGGGTTAATCGTCAACAGACAACACTTCCATCTTCAGTACTATCTGCTGATAGTATGCATATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCCAATCGAAGTCCGTTCACTATTTTCTACAATCCAAGGGCATGTCCATCAGATTTTGTTATTCCACTGGCTAAATACAGAAAAGCTGTATTTGGGACTCAGGTCTCAGTTGGTATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGCGACGTGGATCCTTTGAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAACCAGGCTGTGGTGATAAGCAGACTAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTAAAACGGCCACTGCAATCTGGTTTTTTGGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTATAAGAGTTCCAGAAAACGGAGCAATGGAGCTCTCAAACTCAATTCCAAATCTCTATTCAGAACAACTGATGAAAATGCTTTTTAAGCCCCAGGTCATTAACAATAACGGAGCATTTTTATCTGTCATGCAACAAGATTCTGCCGTTACAAGAGGTCCCTTGCCAGAGATAAAGGCCACACTGGTAGCAGAGAACATGCCACTTAAAAATACACATTCTCAATTTATTCCTGACCAACCAAATGCCTTAAACATGCACATGCACTCGCTGTTGAAAAGTGATCAGCCTGAAAAATTGTATCCTCTTGCCAAAATCGATAGTCATCTGCCTTCAGGTATTGTTACTGACAAGCCAAAATTAGAATCTGATCATATGATTGGGTACCCTTCCATGGAAGGATGCAACATTGAAAAGGTGGCAGCAAATCCTGTAAACCAGCAAGTCCTGGCAAATCAATTGACATTCCATAATCAAAACCAGAGTCCATTATTACTCACTCAATCTAGTCCATGGTCCATGCAACCTCAGCTGGAAGCGTCCATACCCCATCCTCAAATGATTGACGTGGGTCAAGCTGATTCTGCTATGGTAAATGGCCTGCTTCATCAGCCAGATATTGATGAATGGATGGTGTATGCGACTTCCCAACCTTTTGCTGGGCAGAACAGACCAACTGAACCTTTGCCAGACTTGCAAGAGCATAACTCGCTTCAACCTCAAGTAGTGAATCCCCCTTTGCCTTCAATGAACCATGAAGTGTGGGATCAATATGCCAAGAATATGAAGTTGTTATCTCAAGCAGACCAGCTAACATCCATCTGTCAGCCAGGGCTGTATGGCACCAATGGCATATCTAGTTCCAACAATTTGAGGGATCTTTCAGCTGAGAGCAACAACCAGAGTGAGATTTGTGTCAATGTTGATGTTAGTAACAGTGTAGGTACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGACGAGTTTTGCACAATGAAGGACACAGAATTTCAGAATCCCCGAGATTGCATGGTCGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACCTCGGCTAATCTGGCTGAGTCGCATGCCTTTCCTCTCAGTGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCAAGTTGATTTTGATGAAAACAGCTTTCTGCAGAATAACTCATGGCAGCAAGTACCTGCACCCATCCGAACCTACACAAAGGTGCAAAAGGCAGGTTCCGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGATTGGATGGTCTACTGAATGACACTAAAGGTTCAGGATGGAAATTGGTGTACGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGTTGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA 3230 0.4337 MASVEEKIKTAGGMVVGAQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLVWLYSVALAGCKSSGFFLLDYTIQPPTQELVVRDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKAVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQTRVSVWEIETPESLFIFPSLTSGLKRPLQSGFLENEWGTLLRRPFIRVPENGAMELSNSIPNLYSEQLMKMLFKPQVINNNGAFLSVMQQDSAVTRGPLPEIKATLVAENMPLKNTHSQFIPDQPNALNMHMHSLLKSDQPEKLYPLAKIDSHLPSGIVTDKPKLESDHMIGYPSMEGCNIEKVAANPVNQQVLANQLTFHNQNQSPLLLTQSSPWSMQPQLEASIPHPQMIDVGQADSAMVNGLLHQPDIDEWMVYATSQPFAGQNRPTEPLPDLQEHNSLQPQVVNPPLPSMNHEVWDQYAKNMKLLSQADQLTSICQPGLYGTNGISSSNNLRDLSAESNNQSEICVNVDVSNSVGTTMVDPSTSSTILDEFCTMKDTEFQNPRDCMVGNLSSSQDVQSQITSANLAESHAFPLSDIPDNSGGTSSSQVDFDENSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01366 946 Gene3D - 330 402 - -
Pste8g01366 946 ProSiteProfiles B3 DNA-binding domain profile. 147 268 IPR003340 GO:0003677
Pste8g01366 946 Gene3D - 145 267 IPR015300 -
Pste8g01366 946 SUPERFAMILY DNA-binding pseudobarrel domain 135 295 IPR015300 -
Pste8g01366 946 SMART B3_2 147 268 IPR003340 GO:0003677
Pste8g01366 946 FunFam Auxin response factor 330 402 - -
Pste8g01366 946 Pfam B3 DNA binding domain 147 267 IPR003340 GO:0003677
Pste8g01366 946 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 38 930 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste8g01366 946 SUPERFAMILY CAD & PB1 domains 842 919 - -
Pste8g01366 946 ProSiteProfiles PB1 domain profile. 840 924 IPR000270 GO:0005515
Pste8g01366 946 Pfam AUX/IAA family 837 927 IPR033389 -
Pste8g01366 946 CDD B3_DNA 146 266 IPR003340 GO:0003677
Pste8g01366 946 Pfam Auxin response factor 292 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste8g01366 946 Gene3D - 837 929 - -
Pste8g01366 946 FunFam Auxin response factor 836 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01366 Pste-Chr8 7311827 7317151 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste8g01366 B3 2.5e-18 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01366 8 7311827 7317151 Pste8g01366 8 7311827 7317151 ECH