Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01248 AAAAAAAATTCTAGAAAAAAGTAATGGTAAACTGAAAGCAGGAATTTGTATGGTGCAACTGCAAGCAGTGAGTGAGTGATGAAGATGAAAAGTGGTTTCCATTTAATTGAAGTGGTAGGCTAGGAAGCATTTACATTTGCTTTGGTGTGTGGCACTGCAAAGGGCTAAGCCTTGTCTGTGTGTGGCTGTGGAGAAGGGATGCTTTGCTTGATGCTTGGAAAAACAAAACAAAAGGCATGAGGATGTGATGCCCATTTTTCTAGTTTTAGTTTTATCCGCAAGCTTTGTTTTGTGAGTTGTAACTTGTAACCTATAAACCCACACAACCACTACCTCCACCACCTCTCATCTTCCACTCTTTCCTTTTGTTTTGTCCAAGACATTGGCTTTGGAGTTTGAGGTACAGTCTTGGAAGGATTCACCACATTCCTCACCACCCTTTGTGTCTTCCAACTTTTCTGCAAGATTTCCTCACTTTCTAGGCCCTTGTCTCAGGTTCTACACCTATCATAATGCCATTCAGGAGTATTATACGTGAGCTCAAGGAGATTGGAGGGGGCATCAGCAACATGTATAGAAGAGGCGGAGAAGCCAAGCATGTGCATCGACATGGAAAATCTCACATTGCACCAGAATGTTCCTTACCATCAGCATCATATTCATCATCATCATATTCATCATCATCATCAGCAGCATCCGCATCATCACAGAGTCCATGGGCTAACTTACCACCTGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCCTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGTTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCTGAACAGTGTGGCTTTCTCACTTTCCCCATATCACTAAAGCAGCCTGGTCCAAGAGACTCTCCTATCCAGTGTTTTATTAGGAGAGAAAGAGTGACCTCAACATATTGTTTATATCTCGGCCTCAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGTTGCTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTATAATATCATTGATTGCTGATGATTTTTCTCGAACTAGCAACACTTACATTGGAAAGCTGAGATCTAATTTTCTGGGCACCAAGTTCACGATCTTGGATGGTGAGCTCCCACACGAAGCTTCACTTCCTTTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAAGGTTGCTGCTGCTGCTAACTACAAGGTGGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTATGATGCACTTAATCCCCATGTCTGCAATCCAAGACGGAGGGTCTGCTCCTACTCCTTTGAAATTTACCAATTGTCTTAATGAGCATGCATCTACCACCACCCCAGATTCAAAAGGAAAGAAGCCTGAAGTTGAGTTTGACTCAAGTGGCATTGATATTACTCAAGAATCGACCCTAAGAGCAAGAGAACCGTTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCAGCAGAACCATGCCAAAATGTTTCAGCTGCCGAACAAGAAAAAGTGATACTGCAATTTGGAAAAATTGGGAAGGACATATTCACTATGGATTACCGATATCCCCTCTCAGCTTTCCAAGCCTTTGCCATATGCTTGAGCAGCTTCGACACAAAACCAGCTTGTGAATGAATGATCATGACTTCTTTATCCCCATTGTGGACTAATAGTCCCGTCATGTCACTCTTCCTTGATATTAAATGTACATATTTTCATAAGGAAGGAGAGAAGCTGGACTAAATAGCTCTCATTCTAGTGAGAACTTTCATTCTCTATGCACACGTTTAATTTGTGTAACGCTAGCTGTTACGATTGATGTTTTGGCAACTCTGATGTAAACAAACTTAATTTCTTCAAGCATCAATCACATAAGAAAAT 2054 0.4241 MPFRSIIRELKEIGGGISNMYRRGGEAKHVHRHGKSHIAPECSLPSASYSSSSYSSSSSAASASSQSPWANLPPELLLDIIQRLEASETSWPARRALVACASVCRLWREITKDVVKTPEQCGFLTFPISLKQPGPRDSPIQCFIRRERVTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIISLIADDFSRTSNTYIGKLRSNFLGTKFTILDGELPHEASLPLNCKLQQRVHLKQVLPKVAAAANYKVATVSYELNVLRTRGPRRMRCMMHLIPMSAIQDGGSAPTPLKFTNCLNEHASTTTPDSKGKKPEVEFDSSGIDITQESTLRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01248 431 Gene3D Tubby Protein; Chain A 128 431 IPR025659 -
Pste8g01248 431 SUPERFAMILY Tubby C-terminal domain-like 118 431 IPR025659 -
Pste8g01248 431 CDD F-box_AtTLP-like 69 113 - -
Pste8g01248 431 Gene3D - 62 115 - -
Pste8g01248 431 MobiDBLite consensus disorder prediction 302 321 - -
Pste8g01248 431 Pfam Tub family 130 426 IPR000007 -
Pste8g01248 431 ProSitePatterns Tub family signature 1. 359 372 IPR018066 -
Pste8g01248 431 PANTHER TUBBY-RELATED 41 429 - -
Pste8g01248 431 Pfam F-box domain 69 116 IPR001810 GO:0005515
Pste8g01248 431 PRINTS Tubby superfamily signature 201 225 IPR000007 -
Pste8g01248 431 PRINTS Tubby superfamily signature 185 201 IPR000007 -
Pste8g01248 431 PRINTS Tubby superfamily signature 341 358 IPR000007 -
Pste8g01248 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Pste8g01248 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Pste8g01248 431 PRINTS Tubby superfamily signature 359 375 IPR000007 -
Pste8g01248 431 PRINTS Tubby superfamily signature 251 278 IPR000007 -
Pste8g01248 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Pste8g01248 431 SUPERFAMILY F-box domain 62 113 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01248 Pste-Chr8 6604041 6607799 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste8g01248 Tub 1.4e-104 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01248 8 6604041 6607799 Pste8g01248 8 6604041 6607799 ECH