Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01075 TATACCCTTCCTTGCCGCGCCCTCTCTCTCTCTCTTGAAATCCAGATTCACTCTTTCTCTCTCTACAAAACCAACCTCGCCTCTCTCCTTTTCCGTTTTTAGCTCTTTCCTTATTTGGCCTCCACACTTCACATCCACTAATAGCAAAAAAAAAAAAAGAGAGAGAGAGAGAGTGAGCGAGGTTGATTCATTAAGATGCAGCAATCAAACGGCTCTGATTCGTCGCAACCGCAGCAGCAACAGTCGTCCGAGCAGAACGCGCCGCCGCGGCAATCACCGGCAGTCGCCAGGCCGCAGCAGTGGCTCCCGATGCAGTACCCGGCCGCCATGGTAATGCCGCACCACATGTTGCCGCCTCAGCATTACGCGCCGCCTCCCTACATGCCTTTCCACCACTACCAGTACGCGCCGCCGCACGTGCCACAACACCATCCCCAGCACCACCAGAATGGATCCGGCGGCGAGAACAAAACCATCTGGATCGGCGATTTGCACCATTGGATGGACGAAAACTATCTCCATCGCTGTTTCGTTTCCACCGGAGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAAACTGGTCTATCAGAGGGTTATGGATTTGTGGAGTTCTTTTCACATGCTACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATTTTGATGCCCAATACAGAGCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACCGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCACGAAACTTTTGCTAGCGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTGAGATTTGGAGATGACAATGAAAGATCCCAGGCCATGACTCAGATGAATGGCGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGAAAATCATCTGGCCATCAACAAGGAGGCCAGTCAAATGGAACATCCAACCAATCTGACACAGATTCTACAAACACAACTATTTTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTTAGGCAGCCATTCTCCCAATATGGCGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTCCAATTTGCCAACAGAAACAATGCTGAAGAGGCACTGCAGAAGCTAAATGGTACAACAATTGGCAAGCAAACTGTCCGTCTTTCATGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGAAATCCCTGGACTGGGGCGTATTATGGGGGACCTATATACGATGGTTATGGATACGCGTTGCCCCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGGGCTTACCCCCTTTATGGAGGCCACCAACAACAAGTAAGCTAAATGAAGTGCAGTGGAGGAGTATCTTTCACAACAAGCTACACAGCATCAAGCTTGAATGTGCAAATTAACTTCTCTCGTTGTAACTTGCTTGATCTGTTGAATTCTTGAGAATCCCTCCTAACTGTGGGAGCGGAGATGAATTTTGATAGTCTGAGGTAGCTCTGTTGGGATTCAATTAGTCATTTGTTTAGGCCTGTAGGAGTAATGACTAATGAGGACCTTAAACTTATTATAGGAATAATTGTCTTAAGTATGACAGCGTTGTGTGCTTGCATTTTATTTGTTTCCCGCAGTTGACATTGAAGTTTTGCCTTTGTTAGCTTTTAAGGGTCATTTCTTTCTTTGCCTTTATTTGCATGTCCCTAAGCTATTCGGAAGCGATTATAGGATTCAACTTCATCTAATTTATAACAG 1872 0.4562 MQQSNGSDSSQPQQQQSSEQNAPPRQSPAVARPQQWLPMQYPAAMVMPHHMLPPQHYAPPPYMPFHHYQYAPPHVPQHHPQHHQNGSGGENKTIWIGDLHHWMDENYLHRCFVSTGEISSIKVIRNKQTGLSEGYGFVEFFSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSNQSDTDSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGGPIYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01075 420 Gene3D - 91 171 IPR012677 -
Pste8g01075 420 CDD RRM3_NGR1_NAM8_like 289 360 - -
Pste8g01075 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Pste8g01075 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Pste8g01075 420 MobiDBLite consensus disorder prediction 265 296 - -
Pste8g01075 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Pste8g01075 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 355 IPR000504 GO:0003723
Pste8g01075 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Pste8g01075 420 CDD RRM2_SECp43_like 184 263 - -
Pste8g01075 420 CDD RRM1_SECp43_like 93 173 - -
Pste8g01075 420 MobiDBLite consensus disorder prediction 260 298 - -
Pste8g01075 420 FunFam Polyadenylate-binding protein RBP47C isoform A 184 260 - -
Pste8g01075 420 SUPERFAMILY RNA-binding domain, RBD 60 173 IPR035979 GO:0003676
Pste8g01075 420 MobiDBLite consensus disorder prediction 1 31 - -
Pste8g01075 420 SUPERFAMILY RNA-binding domain, RBD 184 359 IPR035979 GO:0003676
Pste8g01075 420 Gene3D - 266 368 IPR012677 -
Pste8g01075 420 Gene3D - 184 260 IPR012677 -
Pste8g01075 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 366 - -
Pste8g01075 420 SMART rrm1_1 186 260 IPR000504 GO:0003723
Pste8g01075 420 SMART rrm1_1 93 168 IPR000504 GO:0003723
Pste8g01075 420 SMART rrm1_1 291 358 IPR000504 GO:0003723
Pste8g01075 420 MobiDBLite consensus disorder prediction 1 28 - -
Pste8g01075 420 FunFam Polyadenylate-binding protein RBP47 275 392 - -
Pste8g01075 420 FunFam Polyadenylate-binding protein RBP47B 91 171 - -
Pste8g01075 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01075 Pste-Chr8 5617659 5622703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01075 62 370 Eukaryotic Initiation Factors Gene Family AT4G34110 27.848 9.36e-31 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01075 8 5617659 5622703 Pste8g01075 8 5617659 5622703 ECH
Pste8g01075 8 5617659 5622703 Pste2g00982 2 10417885 10423330 PCT