Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00961 TGACTTTTGCATACACACTCTCTCTCATCTATTGGGCTGTCTGATATTGTTTTATTTTTGTCCTAAATTGAAGATTACTGCTCCTCTTTAATCTCTCCTCACATTATTCATTCTTTCATCTTATTTTTTGATATCATTCTCCACCAAGAACAACACCCCTTCTTCTCTTTTCTTCTTCCCTTTTCTTTTCTCAGTTTTTGTTCTTTCTCCCCTCCCCTGGTGTGGAAATCGATCCACAAATAAAAAGTTAAAAAAATCCCCAACAAAACGTGGGTTGGGGTGCTTTCTTTGCTTAATCTCTCGATACGGTCAACTGAGTGCATTCCTTGCTTCTTCATTGAGGAGCTCTTTTCATATAGTTAACAGTTTTTGACTTCAGAATTTTCTTGATATCTTCAATGCAAGGGCAGAGAGGTACAGTTGGCTCGTTGCAAGAAACAATAGAATTTGATTGTGGGTCTACATCCAGTGCTGCTACAGTTGATCAGAATATTTTCTGGAGTAATATGCGGAATCCTGCCGGAAATCAATATTTAGTTTCCCCCACTGACATAAACTCGTCTTATGTGAATTCTATAAACCATGAATGGCAGAACTTGAGTGGACGAAGCTTAGGCGAGCCAAGTTCCAGCAATACACAGAATAAGGTTACCAACAATGAGCAGAAAAGAGAGCTAGGATTATCATCTCCAATAAGTTCTGGTGCTATAGTTGGTACAAGACTTGAAGAAAGGTGCTTTGAACCAAACAATACTTTTTCATTGGACAATGTCAATACAGGTCCTATGTATATGCGCAGCTCCAATTCTCATTTGGCGCCACAAAATCTCAACCTGAATGCAAGTTTAGCAGATAGTGGCAATGATAATCATGTGGAGCATCTTCCTAACTTGAACAAGTCTAGTGGACCGGTAAATGAGCATATTCCTCCTACAGTTGGTTCTGGTTCTTTTCTGCTTCCTTCTGGAACTAATGGCTTTTTAGTTGAGGAAACTGATGGTAGGCCAGGTTGTTCTCTAGACACCCGTCGTGTATCCTGTAAAAGAAAGGTTGTTGAACAAACTGCTGGACAATCTTCTGATGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGGACTTGGAACACTCTTCCTACGCAGGACTATGGGGGGAGCAGCTTTATAAGATCTGCTCCAATGGAACAAGTAAATGCTAGACTTGGCCTGAATGCTGGGGATGCAGCCTCTGAAAGCCTTCCTGAGTCAAATGTTTCGGGTGGCTCACAAGGCTTCAACAGAAATGTTCGATTGAGGGTAAATCCTTCAAGTCAACAAATTTCCGTTCCTCCCACTGCGATGTCAAGTGGGAATGTTATCAGGAATTCTGGTGTTTCTTCTCCCTCTCCATTATTGCAACGATTTCATGCTGTTGATAATTCTTTGGACCTGAGATCAGTACCACCTGTAGATACTATTGTTCCTCAAAGCCAGCCCTTTGTAATTCATGTTCCTACCTTGCCAAGGAATGCACAGTCATTCAGGTGGAGTGGTGGCTCCAACTCAACAAACAACCATTCATCAAACCTATTTATATCTGCAGATAGAAATAATCTTCCAAGCGAGGAAGCAAACTCAAGAAGTATGCCTAGAAACATTATAGAATACCCAATGTTTTTGCCTGGAACTAATTTAAGAAACATGGTTCGACATCCTGCTAGAGCTTCAAATAATGCAAATCTAAGTATTCCAGGAAATGTTGGTTCTTCATCGCGGGCTGGGTCTAATACATCTGTCAATCCATCATCTGCCTCTGCATGGGTTTCTCGCCCTAATCCTCAGCAGTATCCACGCCGGTTATCTGAATATGTTCGTCGATCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAATAATTATTCTTCTTTCCGTGGTCCTGCTTCATTTGAATCAAGGGGACTTTCATCTGGGGTAAACCCATTCGAGAGGCCAGGTGATGGTGAATTTGGAATTCCTTATCCATTACGATCTTTGGCTATTGCTGGTGAAGGAAGCAGTAGACTTGTATCTGAGCTCCGAAATGTGTTGGGCATCATGCGTAGGGGTGGGAACCTGCGAGCCGAGGATGTTATGATCCTCGACCATTCAGTGTTGTCTGGAATTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTAGCTCTGGAGGAACGCATTGGAAATGTGAGCACTGGATTGAGTGAGGAGTCCATATTGAAACATTTGAAAAAGAAGAAGTATTCAGCTGGACCAGGTTCTCCGCATGAGGCAGAACCTTGCTGTGTTTGTCAGGAGGAGTATAAAGATGGAGATGATATAGGATCACTGGATTGTGGACATGATTACCATTCCGACTGTATTAAACAGTGGCTAATGCATAAGAATTTGCTTGGCAACATGAGGCTTGTGTCAAAATATTCTAAGAACATGAAAATTGAGGTCAAAGAAAGTGGCACAATTAATATGGAAATTTTGCTG 2540 0.4165 MQGQRGTVGSLQETIEFDCGSTSSAATVDQNIFWSNMRNPAGNQYLVSPTDINSSYVNSINHEWQNLSGRSLGEPSSSNTQNKVTNNEQKRELGLSSPISSGAIVGTRLEERCFEPNNTFSLDNVNTGPMYMRSSNSHLAPQNLNLNASLADSGNDNHVEHLPNLNKSSGPVNEHIPPTVGSGSFLLPSGTNGFLVEETDGRPGCSLDTRRVSCKRKVVEQTAGQSSDGGSSSYSQHTDGRTWNTLPTQDYGGSSFIRSAPMEQVNARLGLNAGDAASESLPESNVSGGSQGFNRNVRLRVNPSSQQISVPPTAMSSGNVIRNSGVSSPSPLLQRFHAVDNSLDLRSVPPVDTIVPQSQPFVIHVPTLPRNAQSFRWSGGSNSTNNHSSNLFISADRNNLPSEEANSRSMPRNIIEYPMFLPGTNLRNMVRHPARASNNANLSIPGNVGSSSRAGSNTSVNPSSASAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYSSFRGPASFESRGLSSGVNPFERPGDGEFGIPYPLRSLAIAGEGSSRLVSELRNVLGIMRRGGNLRAEDVMILDHSVLSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEESILKHLKKKKYSAGPGSPHEAEPCCVCQEEYKDGDDIGSLDCGHDYHSDCIKQWLMHKNLLGNMRLVSKYSKNMKIEVKESGTINMEILL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00961 714 MobiDBLite consensus disorder prediction 437 474 - -
Pste8g00961 714 SUPERFAMILY RING/U-box 647 684 - -
Pste8g00961 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 684 IPR013083 -
Pste8g00961 714 MobiDBLite consensus disorder prediction 67 92 - -
Pste8g00961 714 MobiDBLite consensus disorder prediction 219 247 - -
Pste8g00961 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 145 683 IPR045191 GO:0061630
Pste8g00961 714 MobiDBLite consensus disorder prediction 218 247 - -
Pste8g00961 714 ProSiteProfiles Zinc finger RING-type profile. 648 678 IPR001841 -
Pste8g00961 714 Pfam Ring finger domain 648 683 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00961 Pste-Chr8 5009572 5015319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00961 1 684 C3H Transcription Factor Family AT2G15530 31.317 1.21e-64 226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00961 8 5009572 5015319 Pste8g00961 8 5009572 5015319 ECH