Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00950 CGCTGAGCTACCTATCATCAAGTTCTCCACCATATGTAAGTAAGTAAGTAATCAAAGCATGAAGGTGCATCAGTTCGCACGTCGATTCTGGGAGCACGAACCCTCCCTCACACTTGGCTGCAAACGCTTACGCCCCCTTGCCCCCAAGCTCTCCAACACCGACACCATTACTACAATATCTCCACCTCCTGTCACAACCTTCGACCTCAAAAGCTTCATCAAACCTGATAGTGCCTCCACAAAACTTGTATCCGTTGACAATAATAAGAAATACACAACTTCACCTCAAAGCCAGGTAGAAACGCATGTTCCAGGAGGGACACGATGGAATCCAACGCAAGAACAGATAGGGATATTGGAAATGTTGTATAAAGGAGGTATGCGAACACCAAATGCTCAACAAATAGAGCAGATCACAACACAACTTAGCAAGTACGGAAAGATCGAAGGGAAAAACGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGTAACAACCTAGGCCTAGCTCATAGTCCTTGTACTCCCACCACAATACTGTCACCTCCCTTTAGTTGTAGCGTAATAACCTCTTTGGACACCACAAAACGGAGTGAAGTAGTAGAAAGAGAGGAGGAAGATAGTCCGATGAAGAAGTGTAGGAGTTGCGCATTTGAGTATTTGGAAGACCAAAGTTGGTCATCATCGTGTAATAAGGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGAAGGGGTTTGTTTAATTGTTGACCATTTAACGAGAATTGAAATATCTTCAGCTTTTGTTCAGAATCCTGGTCCATCATTCATCAATATGTGCTTTAGTTTTCGTTTTCTCCTTTGCTTTGTTGGGAAATTAAACAATTGAAGGAACAGACAAAGTTGTCTACAATGTGTACTGTTCCCGCTTTGAGACCAAATTAACCAAACCTGCTTAATTGTCTCTTTGCTTGTTTATTTCAGCGCAGTTGGTGAGAATAAATCGAAGCTTTTAGGTTAAAAGGAGGAGCTGTGGAC 1057 0.4314 MKVHQFARRFWEHEPSLTLGCKRLRPLAPKLSNTDTITTISPPPVTTFDLKSFIKPDSASTKLVSVDNNKKYTTSPQSQVETHVPGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITTQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPCTPTTILSPPFSCSVITSLDTTKRSEVVEREEEDSPMKKCRSCAFEYLEDQSWSSSCNKEEEHRTLELFPLHPEGR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00950 236 SMART HOX_1 85 152 IPR001356 GO:0003677
Pste8g00950 236 Pfam Homeodomain 88 147 IPR001356 GO:0003677
Pste8g00950 236 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677
Pste8g00950 236 SUPERFAMILY Homeodomain-like 86 151 IPR009057 -
Pste8g00950 236 FunFam WUSCHEL-related homeobox 4 87 154 - -
Pste8g00950 236 CDD homeodomain 88 149 IPR001356 GO:0003677
Pste8g00950 236 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 236 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Pste8g00950 236 MobiDBLite consensus disorder prediction 72 92 - -
Pste8g00950 236 Gene3D - 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00950 Pste-Chr8 4954192 4955768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00950 1 178 Wox Gene Family AT1G46480 60.847 3.46e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pste8g00950 Homeodomain 7.1e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00950 8 4954192 4955768 Pste8g00950 8 4954192 4955768 ECH