Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00920 TTCCAATCCACATGTGCCATTCTTTCTCCCTTCTCTTCCTCTTCCCCTTCATTTCTTTTTCTTCTCATCTTCCCATATTCACCACGTTAACTATACATTAATAATATCTTTTTTTATAATTACAATTTCTGCGTCCACGGATATTATTATTGGCTACACCTAATCTTGATCAATTATTATTTTAATCCAACCCTTCACCCTATCTGTCTTTATAAGGTCCACCTTCACTGCACCTTTTCCCCCACTCTCTCACCTTTCTACTCTTCCCCCCCATTTACTCTCTCCTAAGAAAAATGGCTTCTTTTACATCCTCCACCATGGTGCTTCTGTTCATGCTCTTCGCGCTTTCATCGGCCTTGGACATGTCCATAATCTCCTACGACAACGCCCACGTGGACAAGGCCACGTGGCGCACCGACGAGGAGGTCATGTCCATGTACGAAGACTGGCTCGTCAACAACGGAAAATTGTACAACGCTCTCGGTGAGAAGGAAAAGAGGTTCGAGATCTTCAAGGACAACCTGCGATTCATCGACCACCACAACTCTCAGAACAAAACCTACAAATTGGGTCTCAACCGCTTCGCAGATCTCACCAACGACGAGTACAGAGCTAAGTACTTGGGAACTAAGATCGATCCCAACCGCAGGTTAGGAAGGACCCCGAGCAACCGCTACGCGCCACGTGTCGGAGTCACACTTCCCGACTCCATTGATTGGAGGAAGAAAGGGGCTGTTCCTCCGGTCAAAGACCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCGGCCATTGGTGCAGTGGAAGGAATAAATAAGATAGTGACTGGCGAACTAATCTCACTATCCGAACAAGAGTTAGTGGACTGTGATACAGGATATAACCAAGGATGTAATGGAGGACTTATGGACTATGCCTTTAAGTTCATAATAAATAATGGTGGCGTTGATACTGATGAGGATTACCCTTACAAAGGCGTTGATGGTACATGTGACCAAGTCAGGAAAAATGCTAAGGTTGTCACTATTGACTCATATGAAGATGTTACTCCGAATGATGAGGCAGCCCTCAAAACTGCCGTTGCAAATCAGCCTGTGAGCGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATTCATCTGGTGTTTTCACTGGGAGATGTGGTACAGCACTAGATCATGGTGTTGTGGCTGTAGGTTATGGTACAGAAAATGGTCATGATTATTGGATTGTAAGAAATTCATGGGGTTCTAGATGGGGAGAGGATGGCTATGTTAAATTGGAAAGAAATCTGGCTAATAGCAAATCAGGCAAGTGTGGAATTGCAATTGAGCCATCTTATCCCGTTAAGACTGGTGCCAATCCCCCCAAACCTGGTCCATCACCCCCTTCACCTGTGAAACCACCAAATGTCTGTGACAATTACTACAGCTGTGCCGATAGTGCCACTTGTTGCTGTATTTTTGAGTTTGGAAAGACCTGCTTCGAATGGGGTTGCTGTCCTCTTGAGGGTGCTACCTGCTGTGAAGACCACTACAGTTGCTGCCCTCATGACTTTCCCATCTGCAATGTTTATGCTGGAACTTGTCTCAAGAGCAAGAACAATCCCTTTGGAGTGAAGGCACTAAGGCGTACTCCAGCTAAGCCCCATTGGGCCTTTGGAGGCAAGAACAAGTTCAACAGTGCTTAAGCAGTCAAAGGGAATGTCTACGTGCAAAAGGAGGCGATGATGAAGTAAAAGGGAAGATGAATGACTGAAACACCAGCTGATACACTTCTTCTTTACTTTTCACCTAACACAGCACGTGACATACAGATCTTTGCCATTTTATTATGATACAAATGAAATGGATATATTCTGTATCAAATCCCGGTCAGATATTGGCTGTGTACATAGGGTTATATTATTTGATGCACTGTATTTGTATTGAAGTTCCAAATGGCGAACATATTTGATTGCTGTTAGTTTCCTACTTCTGTAGATTATTTGATAATGCAGCAATATTTGAATTTGTCCCATTTTCAGTTGCTATTTTATTTCCTAACAATGTGGATTACGACAGACCACCCATTGCTTTGTTGTATTCTGTGTTCAGTCTTAATTATGTTGTGATGATATTTACTTTGATTGAATCGACACAGTGGGTGACGTCTATAATGAAGTAGGAGG 2171 0.4348 MASFTSSTMVLLFMLFALSSALDMSIISYDNAHVDKATWRTDEEVMSMYEDWLVNNGKLYNALGEKEKRFEIFKDNLRFIDHHNSQNKTYKLGLNRFADLTNDEYRAKYLGTKIDPNRRLGRTPSNRYAPRVGVTLPDSIDWRKKGAVPPVKDQGSCGSCWAFSAIGAVEGINKIVTGELISLSEQELVDCDTGYNQGCNGGLMDYAFKFIINNGGVDTDEDYPYKGVDGTCDQVRKNAKVVTIDSYEDVTPNDEAALKTAVANQPVSVAIEGGGREFQLYSSGVFTGRCGTALDHGVVAVGYGTENGHDYWIVRNSWGSRWGEDGYVKLERNLANSKSGKCGIAIEPSYPVKTGANPPKPGPSPPSPVKPPNVCDNYYSCADSATCCCIFEFGKTCFEWGCCPLEGATCCEDHYSCCPHDFPICNVYAGTCLKSKNNPFGVKALRRTPAKPHWAFGGKNKFNSA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00920 465 Pfam Granulin 386 433 IPR000118 -
Pste8g00920 465 Pfam Papain family cysteine protease 136 352 IPR000668 GO:0006508|GO:0008234
Pste8g00920 465 SMART GRAN_2 375 432 IPR000118 -
Pste8g00920 465 Pfam Cathepsin propeptide inhibitor domain (I29) 49 105 IPR013201 -
Pste8g00920 465 Gene3D Cysteine proteinases 28 354 - -
Pste8g00920 465 SMART Inhibitor_I29_2 49 105 IPR013201 -
Pste8g00920 465 SUPERFAMILY Granulin repeat 372 406 - -
Pste8g00920 465 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Pste8g00920 465 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Pste8g00920 465 PRINTS Papain cysteine protease (C1) family signature 311 317 IPR000668 GO:0006508|GO:0008234
Pste8g00920 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
Pste8g00920 465 FunFam Cysteine protease 1 25 354 - -
Pste8g00920 465 FunFam Cysteine protease 1 372 435 - -
Pste8g00920 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 311 330 IPR025661 -
Pste8g00920 465 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 41 346 IPR013128 GO:0008234
Pste8g00920 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Pste8g00920 465 SUPERFAMILY Cysteine proteinases 40 352 IPR038765 -
Pste8g00920 465 SMART pept_c1 136 352 IPR000668 GO:0006508|GO:0008234
Pste8g00920 465 CDD Peptidase_C1A 137 351 IPR039417 -
Pste8g00920 465 Gene3D Granulin 373 435 IPR037277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00920 Pste-Chr8 4788802 4793181 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00920 8 4788802 4793181 Pste7g01068 7 9801766 9803776 ECH
Pste8g00920 8 4788802 4793181 Pste1g01715 1 5276575 5278691 ECH
Pste8g00920 8 4788802 4793181 Pste8g00920 8 4788802 4793181 ECH
Pste8g00920 8 4788802 4793181 Pste2g01080 2 11585423 11592015 PCT