Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00909 CACGCCATCACTCACTGCCTCCCTTTCCTCCTCTCAAAACAGAGTAACCTCTCTAATGTCTAATCTATGAAAGAATTTCACAATCTAAACTCTCTCCACTCTATAATCAACAAAGATCTATGTCACCAAACCACCTCTTCTTAGAACAAAATATGGCACATCATTACCCAAACTCCCTCCTAGATACTCTAGACTGTTTAGAAGATCACATTCATTGGGAAGAAAAACAAACAGAAGATGACAACAGTAGCACAACAACAACAACCACAAACCCCTCCGATGTGGTCTTGCTAGAACACGACCTCTTCTGGGATCACCAAGAGTTGTCTTCTCTTCTCGCTAAAGAACACCAAAATCAGCTCTCCAATTCTCTCCTAAACAACCCCGTTTTAGCCTCATGGCGAGAAGAAGCAGTGGAGTGGATTCTCAAAGTGAATGCCCATTATTCCTTTTCTACCCTCACCGCAGTTCTCGCTGTTAACTACCTCGATAGGTTCCTCTTCAGCTTCACATTTCAGAACGAGAAGCCTTGGTTCATGCAACTAGCTGCAGTGGCATGCCTCTCTCTCGCTGCCAAGGTTGAAGAGACCAACGTGCCCCTTTTCGTGGACCTCCAAGTGGACGAGACTAGGTTCTTGTTCGAAGCCAAAACGATCAAGAGAATGGAAATCTTGGTGCTTTCCACTCTTGGATGGAAGATGAACCCAATAACACCCCTTTCATTTCTTGACTATATCACAAGGAAACTTGGGTTGAAAGGTTATCTCTGCAGGGAGTTCCTAAGAAAGTGTGAATCCGTTCTTCTCTCTGTCTTTGCAGATTTGAGATTTATGAGTTATCTACCCTCTGAGTTGGCCACTGCTACAATCATGCGCGTGGTCAATGTTGTGGAGCCTCGTCTAGGAGTGGAATACCAAGATCAGCTCTTGGGAATTCTTGGAATCCACAAGGAGAAGGTGGAAGAATGCTACAAAGTCATGAAGGAGGTTGTGTCAGGGTACGATGAGGAAGGAAAACGATCCATGTTGAAGAAACGCAAGTTTGAGTCCGTTCCTTGTAACCAAAATGGCGTAATGGAAGGGTCGTTAAGCTGTGATAGTTCGAATAATGACTCTTGGGAGTTAGGTGAATCTGTTCCATCCTCCAAGAAGACTAGAACTCAAGATCAGCTTCTATTGAACCATTCAAACACGGATTTTCTAAGCATTCCTCGCTAGTTAATTATTACTCTCGCCCTTTATTTTCAACTTTTACTTCCTCTTTCATCTTACATTTTAATTGCTTTTTTTTGTCTCTTTTGTGAAAGGAAACTCAT 1315 0.4297 MSPNHLFLEQNMAHHYPNSLLDTLDCLEDHIHWEEKQTEDDNSSTTTTTTNPSDVVLLEHDLFWDHQELSSLLAKEHQNQLSNSLLNNPVLASWREEAVEWILKVNAHYSFSTLTAVLAVNYLDRFLFSFTFQNEKPWFMQLAAVACLSLAAKVEETNVPLFVDLQVDETRFLFEAKTIKRMEILVLSTLGWKMNPITPLSFLDYITRKLGLKGYLCREFLRKCESVLLSVFADLRFMSYLPSELATATIMRVVNVVEPRLGVEYQDQLLGILGIHKEKVEECYKVMKEVVSGYDEEGKRSMLKKRKFESVPCNQNGVMEGSLSCDSSNNDSWELGESVPSSKKTRTQDQLLLNHSNTDFLSIPR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00909 365 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Pste8g00909 365 Pfam Cyclin, C-terminal domain 197 302 IPR004367 -
Pste8g00909 365 SUPERFAMILY Cyclin-like 64 195 IPR036915 -
Pste8g00909 365 Gene3D - 69 285 - -
Pste8g00909 365 FunFam D3-type cyclin 88 195 - -
Pste8g00909 365 SMART Cyclin_C_2 197 327 IPR004367 -
Pste8g00909 365 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Pste8g00909 365 FunFam CYCLIN D32 196 285 - -
Pste8g00909 365 PANTHER CYCLINS 71 291 IPR039361 -
Pste8g00909 365 Pfam Cyclin, N-terminal domain 72 195 IPR006671 -
Pste8g00909 365 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
Pste8g00909 365 Gene3D - 82 195 - -
Pste8g00909 365 SMART cyclin_7 100 188 IPR013763 -
Pste8g00909 365 MobiDBLite consensus disorder prediction 322 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00909 Pste-Chr8 4718292 4720308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00909 20 287 Core Cell Cycle Gene Families AT4G34160 51.866 3.22e-90 274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00909 8 4718292 4720308 Pste7g01061 7 9727113 9729201 ECH
Pste8g00909 8 4718292 4720308 Pste4g01033 4 7949707 7951919 ECH
Pste8g00909 8 4718292 4720308 Pste8g00909 8 4718292 4720308 ECH
Pste8g00909 8 4718292 4720308 Pste2g01088 2 11655219 11656878 PCT