Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00875 ATGGATCGGGTCAAGGGTCCATGGAGCCCGGAAGAGGACGAGGCGTTGCAGAGGCTGGTTATGGCCCATGGGCCTAGAAACTGGTCGCTGATTAGCAAGTCCATTCCGGGTCGATCCGGGAAATCGTGCCGCTTGCGGTGGTGCAACCAGCTCTCGCCCAAGGTGGAGCACCGGCCATTCACGCCGGAGGAGGATGAGGCCATCGTCAGGGCCCATGCCAGGTTCGGTAACAAGTGGGCCACCATAGCTCGCTTACTTAACGGCCGAACCGATAACGCCGTTAAGAATCACTGGAACTCCACTCTCAAGAGAAAATGCGCCGATGTTAGTCCCGACATCACGGATCGTCAGCCTCCTAAAAGGGCCGCCAGCGTCGGCGCGGGTCACTTCAACCCGGGAAGCCCATCAGGGTCCGATTTGAGCGATCAGGACCTGCCTGCTCTCTCAAACCCCTCAGCCTCGGCCCATTACAGGCCCAATCTGATGGAAACTGCTTCTTCCGCCTCTGATCCACCCACGCTACTGAGTTTGTCTCCCCCCGGGTCCGGGCCCGGGTCTGCCACCTTGGTTGCACCGAGGCCAGCATCTCCACCGCCGCCTCCACCAGCTGCGGTCACGGTGGAGGAACGTGGGAAGCAACTGTTCAACGCTGAGTTCTTGCGTGTGATGCAAGAGATGATTAGAAGAGAAGTGAGGAGTTACATGTCTGGGATGGAACATAAGGATGGTTTGAGAATACAAACCGAAGCCATTGGGAACGCAGTGGTGAAGCGCATGGGAATTAGCAACATCAAATGA 798 0.5764 MDRVKGPWSPEEDEALQRLVMAHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPKVEHRPFTPEEDEAIVRAHARFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCADVSPDITDRQPPKRAASVGAGHFNPGSPSGSDLSDQDLPALSNPSASAHYRPNLMETASSASDPPTLLSLSPPGSGPGSATLVAPRPASPPPPPPAAVTVEERGKQLFNAEFLRVMQEMIRREVRSYMSGMEHKDGLRIQTEAIGNAVVKRMGISNIK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00875 265 FunFam Transcription factor MYB44 59 105 - -
Pste8g00875 265 SMART sant 56 104 IPR001005 -
Pste8g00875 265 SMART sant 4 53 IPR001005 -
Pste8g00875 265 FunFam MYB transcription factor 5 56 - -
Pste8g00875 265 MobiDBLite consensus disorder prediction 109 204 - -
Pste8g00875 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Pste8g00875 265 CDD SANT 7 49 IPR001005 -
Pste8g00875 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Pste8g00875 265 Gene3D - 58 124 - -
Pste8g00875 265 Gene3D - 4 56 - -
Pste8g00875 265 PANTHER MYB PROTEIN-RELATED 5 156 - -
Pste8g00875 265 MobiDBLite consensus disorder prediction 134 183 - -
Pste8g00875 265 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Pste8g00875 265 Pfam Myb-like DNA-binding domain 8 66 - -
Pste8g00875 265 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Pste8g00875 265 CDD SANT 59 102 IPR001005 -
Pste8g00875 265 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00875 Pste-Chr8 4499760 4500557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00875 1 239 MYB Transcription Factor Family AT4G37260 51.971 7.09e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste8g00875 Myb_DNA-bind_6 1.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00875 8 4499760 4500557 Pste1g02237 1 7527300 7528226 ECH
Pste8g00875 8 4499760 4500557 Pste7g01048 7 9591945 9592817 ECH
Pste8g00875 8 4499760 4500557 Pste8g00875 8 4499760 4500557 ECH