Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00858 GGGAATCCGAGAGAAGCAAATAAGCAAAGGCCATTCATTATTCAGAGCATGCGATTTCGCAGGGTTTTGCTGATCATCCCAAAATGCACAACAACTGGAGCGGGAACCAAACCCTCTGCAAAAATTTCAAAACTCACAAACCCAACATTTATAAACCCTAAGTAATTACAAACTTTTTGGTTCTTCTTCAAACCCTTGTTCCCCTTCTCTTTCTCCCCTTTCGAATTGTAGTTCCAAGTAAGCATGGCAACTTCAGCGAACATGCGCCCCCAACGCGAAGCGAAGAAGAGAGCCGTAGCTGCAATATGCGAACTTCAAAGCACCAACTCCAAGAGGAAACGCGTCGTTTTGGGTGACCTCACCAATGTGTCAAGCGCCGTTGCCGTTTCGCAGATTCAGAAACAGAAAAAAATTAAACTCGAGAAACCTGCAGCTCCGGTTGCCACGCCGGAGAAGAACGTTGAAGAAAGACACGACCCGCAACTGTGTGGCCCCTACGTTTCGGATATATATGACTACCTTCGCACCATGGAGGTTGACGCGGGTAAGAGACCGTTGCCAGATTATGTTCAGAAAGTTCAGAAGGATATCAATGCAAACATGAGGGGTGTTTTAGTAGATTGGTTGGTTGAAGTTGCAGAGGAATATAAACTTGTATCCGACACTCTTTATTTTTGTATATCTTATATAGATAGGTTTTTGTCCGTCGCAGCAGTGTCAAGACAGCAGTTGCAATTGCTTGGAGTTGCTGCAATGCTTGTTGCTTCAAAGTACGAAGAGATTAAGCCACCTGAAGTGGAGGACTTTTGTTACATCTCAGATAATACATACTCTAAGGAAGAGGTGATTCTTCTGTTGCATTTTGTTGTTAGTCTTATGGTTGTGAACATGGAAGCTGATATATTGAGGGCTTTGAAGTTTGAGTTGGGTGGTCCTACAGTGAAGACATTCTTGAGGAGATTTTATAGAGTTGGTCTAGAGGGTGTTGAGACTTCTGATCTCCAGTTTGAGTTCCTTAGCTGCTACCTTGCCGAGCTCAGCTTGTTGGATTATAATTGTGTAAAGTTCTTGCCATCTTTGGTGGCTGCATCTGTTGTATTCCTAGCAAGATTTATGTTCAGCACAAAGACACATCCTTGGAATTCTGCGCTCCAGCAACTCACTAGATATAAACCCGCTGACTTGAAGGAATGTGTTCTAACCTTACATGACTTGTACCTCAGTAGGACAGGAGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGTGTGGCAACAACGGCATCTCCCCCTGAGATACCTCTTTCTTTTTTTTGAATTTTGAAGGGCAGATTCTTAGGCAATTGTGAATTGGCTATTCTTGCTATGACTTTGGTTTCAACTGTTGGTGGAAAAGTATTTCCTAATTCTTGAGATGAGAGTTTCAGACTTTTAGTTGCACTTGCTGAAGGTCAGGGAGATGCTTTCCAGGAAATACAGTGACAATGTGTCTATATGCTGGCTTCACTGACTTTGGGATTGAAATTGTGTGAAAATGAGATAAACCCCCATTAGTTGAGAATTAGGTTTTTTTTTGCAGTTAGAATTTCTTTGTTAGAGTTCCTTGAAGGATTTACAATTTCTTTGTATAGGGAAGTGTTATACATTTTCATTGTACTTGCTCCATTCTAAGATGTCCAAGTCTAATGTTCAGAAAACAATTTTTTTTCTAGTGAACAAGTGTTGGATCTGTAGCAATCATAAAAACTCCGTGGTTGG 1773 0.4157 MATSANMRPQREAKKRAVAAICELQSTNSKRKRVVLGDLTNVSSAVAVSQIQKQKKIKLEKPAAPVATPEKNVEERHDPQLCGPYVSDIYDYLRTMEVDAGKRPLPDYVQKVQKDINANMRGVLVDWLVEVAEEYKLVSDTLYFCISYIDRFLSVAAVSRQQLQLLGVAAMLVASKYEEIKPPEVEDFCYISDNTYSKEEVILLLHFVVSLMVVNMEADILRALKFELGGPTVKTFLRRFYRVGLEGVETSDLQFEFLSCYLAELSLLDYNCVKFLPSLVAASVVFLARFMFSTKTHPWNSALQQLTRYKPADLKECVLTLHDLYLSRTGGSLQAVREKYKQHKFKCVATTASPPEIPLSFF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00858 362 FunFam Cyclin A1 218 350 - -
Pste8g00858 362 Pfam Cyclin, C-terminal domain 231 353 IPR004367 -
Pste8g00858 362 ProSitePatterns Cyclins signature. 121 152 IPR006671 -
Pste8g00858 362 SMART cyclin_7 235 323 IPR013763 -
Pste8g00858 362 SMART cyclin_7 126 210 IPR013763 -
Pste8g00858 362 PIRSF Cyclin_A_B_D_E 1 358 IPR046965 GO:0016538|GO:0044772
Pste8g00858 362 PANTHER CYCLINS 55 348 IPR039361 -
Pste8g00858 362 FunFam Mitotic cyclin 6 104 204 - -
Pste8g00858 362 SUPERFAMILY Cyclin-like 231 355 IPR036915 -
Pste8g00858 362 SMART Cyclin_C_2 231 354 IPR004367 -
Pste8g00858 362 SUPERFAMILY Cyclin-like 77 228 IPR036915 -
Pste8g00858 362 Gene3D - 106 223 - -
Pste8g00858 362 Gene3D - 224 358 - -
Pste8g00858 362 Pfam Cyclin, N-terminal domain 88 228 IPR006671 -
Pste8g00858 362 CDD CYCLIN_AtCycA-like_rpt2 231 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00858 Pste-Chr8 4422949 4426443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00858 1 362 Core Cell Cycle Gene Families AT1G47230 56.349 1.47e-143 409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00858 8 4422949 4426443 Pste8g00858 8 4422949 4426443 ECH
Pste8g00858 8 4422949 4426443 Pste2g01110 2 12006149 12007683 PCT