Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00823 ATGGCTCTGGAAGCTCTGAACTCACCCACAACAACCGCTCCGTCTTTTCCCTTTGAAGACCCAACTATTCCATGGGCCAAACGCAAGCGTTCCAAGCGTTCACGCGACCACCCTTCTGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCGTGGCCGCACCGCCGCTCCTCCGCCCCACCCCACCTCAGATCTTTCCGCCAAGCACACCTACAAATGCTCCGTTTGCGACAAGGTGTTCCCCTCTTACCAAGCACTCGGCGGACACAAGGCCAGTCATCGGAAACTCGTTTCCGCCGCCGATGACCAACCCACCTCCTCCTCCGCCACCACCACCACTAGCTCCGCCAACGGAGGAGGACCCAGGACCCACCAGTGCTCCATCTGCCACAAATCCTTCCCCACCGGACAGGCCCTCGGTGGACACAAACGTTGTCACTACGAAGGTAACGTTAGCGGAAACAGTAACAGCCTTGTCACCGCCTCCGAAGGCATGGGGTCCACTCACACCGTCACTCACCGTGACTTCGATCTCAATATCCCTGCTTTTCCTGATTTTTCTACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCAATCTTGAAGAAACCGCGTCTCTTCGTCATTCCCAAGATCGAAATCCCTCAATTTCAATGA 666 0.5631 MALEALNSPTTTAPSFPFEDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGRTAAPPPHPTSDLSAKHTYKCSVCDKVFPSYQALGGHKASHRKLVSAADDQPTSSSATTTTSSANGGGPRTHQCSICHKSFPTGQALGGHKRCHYEGNVSGNSNSLVTASEGMGSTHTVTHRDFDLNIPAFPDFSTKVGEDEVESPHPILKKPRLFVIPKIEIPQFQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00823 221 Gene3D Classic Zinc Finger 70 148 - -
Pste8g00823 221 MobiDBLite consensus disorder prediction 1 37 - -
Pste8g00823 221 MobiDBLite consensus disorder prediction 1 17 - -
Pste8g00823 221 SMART c2h2final6 73 95 IPR013087 -
Pste8g00823 221 SMART c2h2final6 126 148 IPR013087 -
Pste8g00823 221 Pfam C2H2-type zinc finger 73 97 - -
Pste8g00823 221 Pfam C2H2-type zinc finger 126 149 - -
Pste8g00823 221 MobiDBLite consensus disorder prediction 96 126 - -
Pste8g00823 221 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Pste8g00823 221 SUPERFAMILY beta-beta-alpha zinc fingers 72 148 IPR036236 -
Pste8g00823 221 MobiDBLite consensus disorder prediction 101 126 - -
Pste8g00823 221 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Pste8g00823 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 148 IPR013087 -
Pste8g00823 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Pste8g00823 221 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 184 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00823 Pste-Chr8 4249681 4250346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00823 1 217 C2H2 Transcription Factor Family AT1G27730 53.617 1.09e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste8g00823 zf-C2H2_6 1.9e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00823 8 4249681 4250346 Pste2g01139 2 12397351 12398037 PCT