Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00818 ATGGAATCTCTAGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCCGAATGTTTGCCACTGAGGAGCATGGGCTTGAACGTGATTTCACACCCCAATTTCCACTTCTGCTTGATGGTGGTGATGAATTGAACATTGTGACACAAGACACATTTTTTGCTGATCCTGAAGCCGGTGAAAATGAGCGTATGTTTTACTCTTTAGATGCTCACAACTCAAATTCTTCTCAGTATATTTCTCAAGTAAGTAGGTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATCGCCAATCCGGGTAGCACAAGCTATTATTTTAGTTACCCTGATCACGTGCTAGCAAATAATGCATGTGTATATTCCATGGATGAGAAACATTTTGCCTCTTTTGTCCCATCTCTTGTGGTAACGGAAGAGAGTGCCAAGTTGTATGAAGGTGTGGCAACTCACAAATTGGAGAACTCTGAATGCAACCAAATGAAACCTATTGTTTTTCCCACCAAAAGGAAGCTTGATGTGCCTGCTGAAGATAAAATGAACAACAGATCTGAGAATCACAAGAAAAGGCCTCGAGTTTTAAAAGATGGGCAAGGATGCATGAAAAACACATGGTCCAAGAAGAGTAAAAAAGATGTCAGCAATGGGGAAGAAGCAGAAGAAACTAATGCAGGATCAGAAGGGCAAAGCTCTAGTAGCAACATGTCAGAGGATGATAACGCTTCTAAGGAAAGTAGTGAAAGAGTTCTCAACTCAAATGGGAAAACAAGAGCCAGCAGGGGATCAGCAACAGATCCCCAGAGTCTGTATGCAAGGAAGAGAAGAGAGAGAATAAATGAGCGACTAAGAATCCTACAGAATCTTGTCCCAAATGGGACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATCTATGGATGTACGCTCCACTTGCTTATAATGGACTTGACATTGGACTTAATCTCAACCTGATGAACTCCCTATCACTTTGA 1053 0.416 MESLGAFPDGEWDCFRRMFATEEHGLERDFTPQFPLLLDGGDELNIVTQDTFFADPEAGENERMFYSLDAHNSNSSQYISQVSRYSNSSNCSGDDTVFIANPGSTSYYFSYPDHVLANNACVYSMDEKHFASFVPSLVVTEESAKLYEGVATHKLENSECNQMKPIVFPTKRKLDVPAEDKMNNRSENHKKRPRVLKDGQGCMKNTWSKKSKKDVSNGEEAEETNAGSEGQSSSSNMSEDDNASKESSERVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNLMNSLSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00818 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Pste8g00818 350 Pfam Helix-loop-helix DNA-binding domain 274 314 IPR011598 GO:0046983
Pste8g00818 350 Gene3D - 266 322 IPR036638 GO:0046983
Pste8g00818 350 CDD bHLH_AtIND_like 265 327 - -
Pste8g00818 350 MobiDBLite consensus disorder prediction 171 275 - -
Pste8g00818 350 MobiDBLite consensus disorder prediction 248 268 - -
Pste8g00818 350 MobiDBLite consensus disorder prediction 173 198 - -
Pste8g00818 350 SMART finulus 270 319 IPR011598 GO:0046983
Pste8g00818 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 328 IPR036638 GO:0046983
Pste8g00818 350 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 336 - -
Pste8g00818 350 MobiDBLite consensus disorder prediction 221 241 - -
Pste8g00818 350 FunFam Basic helix-loop-helix transcription factor 265 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00818 Pste-Chr8 4225399 4227177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00818 239 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 83.333 2.21e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste8g00818 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00818 8 4225399 4227177 Pste8g00818 8 4225399 4227177 ECH