Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00803 TACACATGTAAAAATGTTATCCCACTCCCCTCCCATTCATATAGTTGGCTTTTTCGCAACTCGCCACCACCCTCACTTCCCTTTCTCTCTTTCTCAACAGAACAGCGCCCCGAACCTCGTATCCAAACCCAAACCCGAACCCGAGCCTGAATATCAGCTTCGGATCCTAATCCCTCATGGGAACAGAGAGTTACACTTACATGGGGCGCAGTTTGAGCCAACTCAGCATCAAAGACGATTCCTCTTCCTCCGCTTTCAGCGACTGTAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCCCAAACGCGCCGCTTTCTCATCACCTGCGCCACCGAAAATTCCGACGATTTGATCCGCCAACTCGTCACCGACCTCCACTCCTCCTCCGTTGACGATCAGAAACAAGCCGCCATGGAAATCCGATTACTCGCCAAGAACAAGCCGGAGAATCGCATCAAAATAGCCAAAGCCGGCGCAATCAAGCCGCTAATTTCTCTCATTTCCTCGCCGGACCTCCAGCTTCAGGAATACGGCGTCACCGCGATTTTGAATCTCTCCCTCTGCGACGAGAACAAAGAGGTGATAGCCTCCTCCGGCGCGATTAAGCCGCTGGTGCGGGCGTTGAACACAGGGACCGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTGCGGCTGTCGCAGGTGGAGGAGAACAAGGCGGCGATCGGCAGGTCCGGCGCGATTCCGCTGCTGGTGAATCTCTTGGAGAGCGGCGGGTTCCGCGGGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAGATCAGGGCTGTGAAGGCGGGAATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCATACGTGGTGAGCGTGCTGGTGGCGGTGGCGGAGGCGAGGGCGGCGCTGGTGGACGAAGAAGGCGTGCCGGTGCTTGTGGAGATCTTGGAGGTTGGCACGCAGAGGCAGAAGGAAATCGCGGTGGTTATTCTGTTGCAGGTTTGCGAGGACAGCGTGGCTTATCGCACCATGGTGGCTCGCGAAGGTGCTATTCCTCCTTTGGTGGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTAATTGAGCTTCTGCGCCAACCAAGATCCAGCAATGGCGATGCTCGTACATCAGAAGTGGTGGCGTAAACACCAGCTATAATTTATTCACCTGGTGCCCCCACTTCACCGGATTGTAGAAAACGTCACGTTTAAAATTGTGAATTGATTAAACACAACGTGCGTCCTCGTCCTCCAAGAGAGACGGAGAGTTAAACTTTGTAAATATCTTCGTTAATGAGAAGAGCTTTGTAAAGTTTGTGGTACAAATGATAAGAGTTTGAGCTTGGTTTGCTTTTTGGGCTGTGCAAATAATGCACTCTCTCCCATTATTAATGCTTCTTTATTTTTATTTTTTTATTGCTTTTGGATGTGAGGGCTGATGGTATGGCTTTTGGGCCCTCCTACTATTTATGTAATTATTATTGCCGTTATAAATGTGGCATTAAATATTTTTTTTCGGTTTTAAATTTAGAAGAATAACCAGAAAAGAAACGTAGTTTTGAAAA 1651 0.5124 MGTESYTYMGRSLSQLSIKDDSSSSAFSDCNSDRSGEFATASSQTRRFLITCATENSDDLIRQLVTDLHSSSVDDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEVIASSGAIKPLVRALNTGTATAKENAACALLRLSQVEENKAAIGRSGAIPLLVNLLESGGFRGKKDASTALYSLCTVKENKIRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVAVAEARAALVDEEGVPVLVEILEVGTQRQKEIAVVILLQVCEDSVAYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSSNGDARTSEVVA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00803 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Pste8g00803 351 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
Pste8g00803 351 SUPERFAMILY ARM repeat 57 332 IPR016024 -
Pste8g00803 351 SMART arm_5 296 336 IPR000225 GO:0005515
Pste8g00803 351 SMART arm_5 90 130 IPR000225 GO:0005515
Pste8g00803 351 SMART arm_5 172 212 IPR000225 GO:0005515
Pste8g00803 351 SMART arm_5 131 171 IPR000225 GO:0005515
Pste8g00803 351 SMART arm_5 254 294 IPR000225 GO:0005515
Pste8g00803 351 SMART arm_5 213 253 IPR000225 GO:0005515
Pste8g00803 351 Gene3D - 39 348 IPR011989 -
Pste8g00803 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Pste8g00803 351 FunFam U-box domain-containing protein 4 45 350 - -
Pste8g00803 351 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Pste8g00803 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Pste8g00803 351 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00803 Pste-Chr8 4152394 4154519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00803 11 341 U-box Gene Family AT2G23140 46.269 7.78e-84 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00803 8 4152394 4154519 Pste2g01147 2 12510762 12513818 PCT