Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01048 ATGATGGCAGTAACCAGAAAGGATATGGACCGGATCAAGGGTCCATGGAGTCCGGAGGAGGACGAGGCCCTGCAGAAGCTGGTGGAGAGGCATGGGCCCAGAAACTGGTCGCTAATAAGCAGGTCCATCCCGGGCCGGTCTGGGAAATCCTGCAGGCTCCGATGGTGCAATCAGCTGTCACCCCAGGTAGAGCACCGGGCCTTCACCACTGAAGAGGACGAAACTATAATCCAGGCCCATGCCCGGTTTGGGAACAAGTGGGCCACCATAGCCCGCCTGCTCTCGGGCCGCACCGATAACGCCATAAAAAATCACTGGAACTCCACCCTAAAGCGCAAGTGCGCTTCCATCATGATCGCCGCCGACGATCCTGCCACAGCAGCAGCAGGCTTCAGCCCACAGCCGCTCAAACGCTCCGTCAGCGCTGGCGCAGCCGTGTCTCCGGGAAGTCCCTCCGGATCCGATGTGAGCGAGTCCAGCGCTCCTGGCGGGGTCTCCCCTGCTCATGTGTTTCGCCCCGTGCCGGTTCGACCGGTTGTGGAAACGGCCTCGTCTTGCGATGACGGACCTACCACTTCACTGTCGCTGTCTCTTCCCGGCGTGGAGTCATTGGAAATCTCAAATCGAGTAGTGGCGGTGCCGGTGAATCCTGTCCCAGTGATGCCAGTGGCGGCTCCGGCTCCAGCTGCTGCTCCTGAAGTTGGATTAGGAGCGTTAAATTTGAGTGCAGAGTTTATGGCAGTGATGCATGAGATGATAAGGAAGGAAGTGAGGAGTTACATGGAGCAACAGAATGAGATGTGTTTTCAGAGTGTGGATGGGTTTAGGAATGTGTCGGTGAAGAGAATTGGGATTAGCAGGGTGGATTCGTAA 873 0.5727 MMAVTRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTTEEDETIIQAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMIAADDPATAAAGFSPQPLKRSVSAGAAVSPGSPSGSDVSESSAPGGVSPAHVFRPVPVRPVVETASSCDDGPTTSLSLSLPGVESLEISNRVVAVPVNPVPVMPVAAPAPAAAPEVGLGALNLSAEFMAVMHEMIRKEVRSYMEQQNEMCFQSVDGFRNVSVKRIGISRVDS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01048 290 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Pste7g01048 290 Gene3D - 67 113 - -
Pste7g01048 290 FunFam Transcription factor MYB44 67 113 - -
Pste7g01048 290 CDD SANT 15 57 IPR001005 -
Pste7g01048 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Pste7g01048 290 MobiDBLite consensus disorder prediction 145 161 - -
Pste7g01048 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Pste7g01048 290 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Pste7g01048 290 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Pste7g01048 290 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Pste7g01048 290 CDD SANT 67 110 IPR001005 -
Pste7g01048 290 PANTHER MYB PROTEIN-RELATED 13 158 - -
Pste7g01048 290 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Pste7g01048 290 FunFam MYB transcription factor 13 64 - -
Pste7g01048 290 Gene3D - 12 64 - -
Pste7g01048 290 SMART sant 12 61 IPR001005 -
Pste7g01048 290 SMART sant 64 112 IPR001005 -
Pste7g01048 290 MobiDBLite consensus disorder prediction 140 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01048 Pste-Chr7 9591945 9592817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01048 5 289 MYB Transcription Factor Family AT4G37260 52.941 2.97e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste7g01048 Myb_DNA-binding 5.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02237 1 7527300 7528226 Pste7g01048 7 9591945 9592817 ECH
Pste8g00875 8 4499760 4500557 Pste7g01048 7 9591945 9592817 ECH
Pste7g01048 7 9591945 9592817 Pste7g01048 7 9591945 9592817 ECH
Pste7g01048 7 9591945 9592817 Pste1g02237 1 7527300 7528226 PCT