Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02850 atggcatcaccatctgaactaagcctggatttcaagcctcaaagctattccttgctactcaaatcatttggagatcaaactgatcagacctacaagcttgaagaattcctctctcgcttagaggaagaacgtcttaagattgatgccttcaagcgcgagcttcctctctgcatgcaacttctcaccaacgccatggaggcatcaaggcagcaacttcaggcctttaaagtgaaccgtggcacaaagccagtacttgaagaattcataccaatgaagcacttaacctcagaaatcaaagagaaggcaacaaacatgtctgacaaggcaaattggatgacatctgcacaactgtggagccaggcaagcgaaggaaccaaacaacaaccaacaagcacatcgcctaaagaagctgatatagggttcaacataagcccaaaactggctctagaaaacaaacagaggaacggtggaggagccttccttccattctcaaaagagagaaactccagccacggctccacattgcggcctcttcctgaactggctcttgcctctgcagagaaagaaatggaggacaagaaacatgctgagttagaaaagggagtttcgtgtcagaataagaaggagaattctggcagttatggaactgtggttgatcaaggaaaaggtggtggcccagttgcatcatctcatgcacaaacaaccactgccactgcacaacaaactcaaaggaaagcaagaaggtgttggtcaccagacctgcaccgtcgatttgtcaatgctcttcaaatgcttggtggatcacaagtggcgaccccaaagcagataagggagttgatgaaggttgacggtttgaccaatgatgaagttaaaagccatttgcagaaatataggcttcacacaagaagacccagtccaagtcctcaagcgggtacagcagcaccacagcttgtggtcctaggcggaatctgggtcccaccggagtatgcgacggcggcacattcaggcacccctactctctacggcgcccacactacatcccacgcgccggcgccacactactgcgcagccacacccatgccgcaagagttctacagtgcggggccaccgcagccgctgcttccggggcctccggcgaaccagaacgcgctgcaccacctgcagatgtacaaggcggcggtgcacgggaacgggtcggtggaagggggggaacggtcggagagcatcgaggacgggaagtcggagagtagcagctggaagggggaaagtggggagagaaaggggatgggtgaagagagcaatgggagtgagatcactctcaagttttag 1329 0.0 MASPSELSLDFKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNRGTKPVLEEFIPMKHLTSEIKEKATNMSDKANWMTSAQLWSQASEGTKQQPTSTSPKEADIGFNISPKLALENKQRNGGGAFLPFSKERNSSHGSTLRPLPELALASAEKEMEDKKHAELEKGVSCQNKKENSGSYGTVVDQGKGGGPVASSHAQTTTATAQQTQRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAGTAAPQLVVLGGIWVPPEYATAAHSGTPTLYGAHTTSHAPAPHYCAATPMPQEFYSAGPPQPLLPGPPANQNALHHLQMYKAAVHGNGSVEGGERSESIEDGKSESSSWKGESGERKGMGEESNGSEITLKF 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02850 442 MobiDBLite consensus disorder prediction 222 248 - -
Pste6g02850 442 MobiDBLite consensus disorder prediction 158 177 - -
Pste6g02850 442 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 420 IPR044787 GO:0003700|GO:0006355
Pste6g02850 442 Coils Coil 33 53 - -
Pste6g02850 442 Gene3D - 244 302 - -
Pste6g02850 442 SUPERFAMILY Homeodomain-like 242 303 IPR009057 -
Pste6g02850 442 Pfam Myb-like DNA-binding domain 247 298 IPR001005 -
Pste6g02850 442 MobiDBLite consensus disorder prediction 227 247 - -
Pste6g02850 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 242 302 IPR017930 -
Pste6g02850 442 FunFam Myb family transcription factor 244 302 - -
Pste6g02850 442 MobiDBLite consensus disorder prediction 404 432 - -
Pste6g02850 442 MobiDBLite consensus disorder prediction 119 138 - -
Pste6g02850 442 NCBIfam myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
Pste6g02850 442 MobiDBLite consensus disorder prediction 397 442 - -
Pste6g02850 442 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02850 Pste-Chr6 16271942 16274877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02850 1 442 G2-like Transcription Factor Family AT2G03500 51.266 2.96e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pste6g02850 Myb_DNA-binding 9.4e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02850 6 16271942 16274877 Pste6g02850 6 16271942 16274877 ECH
Pste6g02850 6 16271942 16274877 Pste2g00265 2 1720694 1723783 PCT