Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02733 atgcaggaaatacactccatgagcggtcccaggtttttctcaggcgccgccaccgccacaggagacaggaggctccgtcctcaccaccagaaccaccaggccctcaaatgcccccgctgcgactccctcaacaccaagttctgctactacaacaactacaacctctcccagcctcgccacttctgcaaaaactgccggcgctactggaccaagggcggcgtcctccgcaacgtccccgtgggtggcggttgccgcaaatccaaacgctccaacaaacccagcaaaacctgttcccaaggcccggctgccgagcccgagcccgagcccgagccagagcgcgaactcaacaactctcattctagcagcgacagctcgaacctggccgccgtggacggcctctcggcgcccctcaactctgattccaacagcatgcaagaagactccaagttcttgatccctgccactgccgaccctcttttggaagcgcctcctctccagcaaggaacaggggactgctctgctatcttctctgatattggccctttcaccagtttgatcaccacttcctctaacgacgcattaaccttcggcttctctaactccctccccgatgcttctacctcctttcattggcagcatcccaagctcaccgctagcgacgatttgaagttgcccgacgcttctttgctcgatccccccgttgatttctcctctctgcatactaaaaccaaccaccctgctttcggatccttcgattggcactcctctccggatccacctttctttgatcttcccaacaccgttgatcacccttactggactcactctcactgagtgaagaggcggagaagaaatttgggtggggcgtggggtagtgatgagttgcatgcgcgagtcggcgtgcgggagaagaaggagttgagtgacaaaagtggggacacgtgggaaagacaagaatgtgatgtgagggttgggatgtgttgtcttgtggtgggcaagcaatggagtggtgtagccagtgcattcacagtggactatcaactcaagcactgttgtggagatatgcatggattgttggcagaggaggaggaggagaaggaggaattgggagccaaagggatgggcaaatgcatgatgcatgaacatgaagatgaacataaggccagcggggttgcccatattgtttgccaaaatagaactaggcacatgcttttcgtggtccttctttcctctcgccactgtgttgtcatagctgcccctattcaaaccttgacgtctcaacctgtgcattgcaccattattgcttacctccttttcctgcacccacttcatctaatattattatattccaccgtccaactcagtcagactatagaccatatgtctggtgatgaatga 1398 0.0 MQEIHSMSGPRFFSGAATATGDRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPSKTCSQGPAAEPEPEPEPERELNNSHSSSDSSNLAAVDGLSAPLNSDSNSMQEDSKFLIPATADPLLEAPPLQQGTGDCSAIFSDIGPFTSLITTSSNDALTFGFSNSLPDASTSFHWQHPKLTASDDLKLPDASLLDPPVDFSSLHTKTNHPAFGSFDWHSSPDPPFFDLPNTVDHPYWTHSHXVKRRRRNLGGAWGSDELHARVGVREKKELSDKSGDTWERQECDVRVGMCCLVVGKQWSGVASAFTVDYQLKHCCGDMHGLLAEEEEEKEELGAKGMGKCMMHEHEDEHKASGVAHIVCQNRTRHMLFVVLLSSRHCVVIAAPIQTLTSQPVHCTIIAYLLFLHPLHLILLYSTVQLSQTIDHMSGDE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02733 465 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Pste6g02733 465 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 167 IPR045174 GO:0003700|GO:0006355
Pste6g02733 465 MobiDBLite consensus disorder prediction 80 146 - -
Pste6g02733 465 MobiDBLite consensus disorder prediction 1 27 - -
Pste6g02733 465 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Pste6g02733 465 MobiDBLite consensus disorder prediction 118 146 - -
Pste6g02733 465 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02733 Pste-Chr6 14871422 14874249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02733 22 277 C2C2-Dof Transcription Factor Family AT5G60850 41.544 5.03e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste6g02733 zf-Dof 5.9e-33 No_clan