Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02582 atgcacgaaattagagaccctgcaattcgcctcttcggtcagaagatccccctccctggagatgttgacagagaaaaagacacccgacaagagcagatacaagaacataaacacctaggacacaaggattgtggagttgaaaatgttactgaggaagaggtagaagatgatcctccttcaaatgatgaagagactaagaattcaggcacatcccctgagtctattgtgaaccccgaaacgccttccatagaagaagaatcggcaaaatcaaaaggtgacaagtcagagaaggaagaaggcgatgcagccaattctcaagagaaaaccctgaagaagccagataaagttctaccatgcccccgctgcaatagcatggacaccaaattctgttactacaacaactacaacatcaaccagccacgttatttctgcaaagcctgtcaaagatactggactgctggtggcaccatgaggaatgttcctgtgggggcaggacggagaaagaacaagaactcaacctctcattatcgccacatcactatctccgaggcccttcaagcagctagacttgacgctcctaatggaacacatctttcaactttgaaaggcaatggtacagtcctcagctttggatcagattctcatgcacctatttgtgattccgtggcttctgtcatgaatcttggagagagaaaggctcttaatggcacaagaaatgggtttcatcatggctttgagggtcaaagactccccgttccttgcaaaagtggggaaaatggtgatgactcttcaactacatcctctataacagtttccatgggagaaaataacaaaaacacattccaacaacaagcagtaccccagaatcatggtttccttcctcaacttccatgcattcctggtgttccttggccctatacatggaattccgcaattcctccacctgctttgtgtccttcaggatttcccctaccattctatcctgctactatttggaactgtggcatgccagggaattggagtgttccatggttttcctctcattcatctgcttcaaacccaaaatttccaagttccaatcctaattctccaactttggggaagcacacgcgggacggtgacattattaagcaagactcattgcacaaagaggaagcttcaaagccaagaaacgggtgtgttttggttcccaaaacgttgagaattgatgatccaaatgaggctgcaaagagttctatatgggcaactctaggaattaagaatgaggcagtgagtgggagaggtatgtttaaggccttccaatcaaagaaggatgaaaagaatcatgttgaagcctctccagtgttgatagctaaccctgcagctttgtctagatcccttaattttcatgagaacacctga 1401 0.0 MHEIRDPAIRLFGQKIPLPGDVDREKDTRQEQIQEHKHLGHKDCGVENVTEEEVEDDPPSNDEETKNSGTSPESIVNPETPSIEEESAKSKGDKSEKEEGDAANSQEKTLKKPDKVLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARLDAPNGTHLSTLKGNGTVLSFGSDSHAPICDSVASVMNLGERKALNGTRNGFHHGFEGQRLPVPCKSGENGDDSSTTSSITVSMGENNKNTFQQQAVPQNHGFLPQLPCIPGVPWPYTWNSAIPPPALCPSGFPLPFYPATIWNCGMPGNWSVPWFSSHSSASNPKFPSSNPNSPTLGKHTRDGDIIKQDSLHKEEASKPRNGCVLVPKTLRIDDPNEAAKSSIWATLGIKNEAVSGRGMFKAFQSKKDEKNHVEASPVLIANPAALSRSLNFHENT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02582 466 MobiDBLite consensus disorder prediction 1 117 - -
Pste6g02582 466 ProSiteProfiles Zinc finger Dof-type profile. 117 171 IPR003851 GO:0003677|GO:0006355
Pste6g02582 466 MobiDBLite consensus disorder prediction 351 372 - -
Pste6g02582 466 MobiDBLite consensus disorder prediction 245 272 - -
Pste6g02582 466 MobiDBLite consensus disorder prediction 351 367 - -
Pste6g02582 466 MobiDBLite consensus disorder prediction 258 272 - -
Pste6g02582 466 MobiDBLite consensus disorder prediction 84 115 - -
Pste6g02582 466 MobiDBLite consensus disorder prediction 64 83 - -
Pste6g02582 466 MobiDBLite consensus disorder prediction 19 48 - -
Pste6g02582 466 ProSitePatterns Zinc finger Dof-type signature. 119 155 IPR003851 GO:0003677|GO:0006355
Pste6g02582 466 PANTHER CYCLIC DOF FACTOR 2 4 466 IPR045174 GO:0003700|GO:0006355
Pste6g02582 466 Pfam Dof domain, zinc finger 114 171 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02582 Pste-Chr6 13201807 13210332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02582 1 464 C2C2-Dof Transcription Factor Family AT3G47500 50.418 3.63e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste6g02582 zf-Dof 2.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02582 6 13201807 13210332 Pste2g00596 2 5720535 5723864 ECH
Pste6g02582 6 13201807 13210332 Pste6g02582 6 13201807 13210332 ECH
Pste3g00305 3 1505580 1508451 Pste6g02582 6 13201807 13210332 ECH
Pste1g01297 1 4129148 4132576 Pste6g02582 6 13201807 13210332 PCT