Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01722 ATGGCTGTAGCTACTGCAGTCCTCAAAGGTGGTGTGGATTTTCCTCATGTCTTTTCTTTCAAGCACAATTCTGAGTTATTTATTCTGGAGCTATATATCATGGAGGGGATGGCTCCAAATTCATGTGCAAGGCCAGTTCTAGAGAAGAAAGCTAGGCCACAAGAGCAACTGAATTGTCCAAGATGCAATTCAACCAACACGAAGTTCTGTTATTACAACAACTACAGCCTCACACAACCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCAGTTGGAGGAGGTTCAAGAAAGAACAAAAAGGTGGGTTCAGCAGCAGCCACAGCTTCATCATCATCAAAGGTTCCAGACCTAAACCCACCAAACCTCTCAGTCTCAGTCTCAGCCATCTCTTCCCAAAACCCTAAAATAATGCATGGAGGGCAAGATCTCAACCTGGCTTTCCCAGCTATGGACAAGTATCATCATGGTATGTCCCCTTATGTTGAGATGCAAAACAGTGACACCACTGCTCATCACCAAACCTCTCCTTCTTGTTCTGCTCCTCCAACCTCTCTTTCAGCTCTTGAGCTACTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCCTCTTCTTCCTTGATGCCAAACTCAGCAAATAATAATGCCCTTTATCCATCAGGGTTTCCCATGCAAGAGGTTAAACCAAGCCTTAGCTTTGATGGAATGGGAAATAGATCATATGATCATCAGGTCCAAGAGAGGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAAACAGCTTTCTGCTTCAGGTGCTGATCAAGCGGAACACAATAAAGAACAACAAGGGAACTCAACTGGATATTGGACTGGCATGATTGGTGAAGGGACATGGTAA 918 0.4477 MAVATAVLKGGVDFPHVFSFKHNSELFILELYIMEGMAPNSCARPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVGSAAATASSSSKVPDLNPPNLSVSVSAISSQNPKIMHGGQDLNLAFPAMDKYHHGMSPYVEMQNSDTTAHHQTSPSCSAPPTSLSALELLRSSMASRGLNPYASSSLMPNSANNNALYPSGFPMQEVKPSLSFDGMGNRSYDHQVQERGGRVLFPFGDVKQLSASGADQAEHNKEQQGNSTGYWTGMIGEGTW 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01722 305 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Pste6g01722 305 MobiDBLite consensus disorder prediction 278 299 - -
Pste6g01722 305 MobiDBLite consensus disorder prediction 113 130 - -
Pste6g01722 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 48 207 IPR045174 GO:0003700|GO:0006355
Pste6g01722 305 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Pste6g01722 305 MobiDBLite consensus disorder prediction 98 130 - -
Pste6g01722 305 MobiDBLite consensus disorder prediction 276 305 - -
Pste6g01722 305 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01722 Pste-Chr6 7683453 7685081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01722 49 305 C2C2-Dof Transcription Factor Family AT3G61850 48.754 2.79e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste6g01722 zf-Dof 3.6e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01722 6 7683453 7685081 Pste6g01722 6 7683453 7685081 ECH
Pste5g03483 5 28530275 28532087 Pste6g01722 6 7683453 7685081 PCT