Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03483 AAGTTGAAGACACACAAGGTGAATTCTCTCTCATATTCTCCGTTACTTTTATGTCTTTTCTTCTCTGAAATATTTACTCATGACTACCGTTCAGTATTGGCAAACGCGATGGAAGTTGGACAAGTGAAACCCATGGAAGGGATAAGTCCCGATTCATGCACAAGGCCAGGGATAGAGAAGAAAGCAAGACCTCAAGAGCAATTGAGTTGTCCAAGGTGCAGTTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCCAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGCTCTCTCAGAAACGTCCCCGTTGGAGGTGGCTCTAGGAAGAACAAGAAGGTCCCCTCATCAAAGGTTCCAGACTTGAATCCTCCAAGCCTCTCGTCAGTCTCAGCTATTTCTTCCCAAAACCCTAAAATGCAAGGAGGGCATGACCTCAATTTGGCTTTTCCTGCTGCTATGGAAAAGTATCATGGCCTGTATCCATATGTTGAGATACCTAAACTTGAACTTGGTGGTGACAATACTAGTCACCACCATTGTCCTTCTTATGCTCCAACTTCTCTTAAAGAAGTTGAGCTTCTACGGTCTGGCATGGCTTCTAGTGGTTTCAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATTCCCTTTACTCACCTGGCTACTCCATGCAGGAAATTAAACCTAACCTTACCTTTTCAGTTGATGGGTTGGGAAATAGATCATTTGGGGTTCAAGAGAATAGTGGTGGTGGGAGGCTTTTGTTACCTTTTGGAGACATCATGCACCTTTCTGCAGGCGTTGAAGAGGAACAAAATAAAGAACAAGGAAATCATTCAACTGGATATTGGACTGGAATAATTGGTGAGGGATCGTCGTGGGTAGATATATCACCTTTATTGATGTATGCAAGCTTCAAAGATTTGGTCCAAATGACTTTTGATGAT 981 0.4292 KLKTHKVNSLSYSPLLLCLFFSEIFTHDYRSVLANAMEVGQVKPMEGISPDSCTRPGIEKKARPQEQLSCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVPSSKVPDLNPPSLSSVSAISSQNPKMQGGHDLNLAFPAAMEKYHGLYPYVEIPKLELGGDNTSHHHCPSYAPTSLKEVELLRSGMASSGFNPYAPNSLMSGSDSLYSPGYSMQEIKPNLTFSVDGLGNRSFGVQENSGGGRLLLPFGDIMHLSAGVEEEQNKEQGNHSTGYWTGIIGEGSSWVDISPLLMYASFKDLVQMTFDD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03483 327 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
Pste5g03483 327 MobiDBLite consensus disorder prediction 130 147 - -
Pste5g03483 327 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Pste5g03483 327 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Pste5g03483 327 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 184 IPR045174 GO:0003700|GO:0006355
Pste5g03483 327 MobiDBLite consensus disorder prediction 112 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03483 Pste-Chr5 28530275 28532087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03483 60 305 C2C2-Dof Transcription Factor Family AT3G61850 47.101 6.71e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste5g03483 zf-Dof 6e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03483 5 28530275 28532087 Pste6g01722 6 7683453 7685081 PCT