Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02395 TCTATGCTCAGCTCAACCACACTCGCTCACCCTCTCTCTCTCTAACTGTTTGATGTGATTCTCTCCACTATTACCTCCCAAAAAATTAAACCATCAACCTTTACAAAAGAGAAAGCTCCAAGAGGAACCATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCATGGCAACAACACTGCTGCCAGCTCACACCTTCTTCTTCCACCACCAATACAACCACCACCTCCTCCACCATCCCAGCAGGTTCATGGACTCGGTGGTAATAGCACTACCGCCGGGTCCATAAGACCTGGTTCGATGGCGGATAAGGCCAGAATGGCCAACATACCTATGCAGGAAGCTCCTCAAAAGTGTCCAAGATGTGAATCAACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGTCACTTCTGCAAGGCCTGCAGAAGGTACTGGACACGTGGCGGCGCCTTGAGGAACGTCCCCGTCGGCGGCGGCTGCCGGAGGAACAAGAGGAGCCGAGGAACCTCCGGCAGCAGCGCCAGGTCGCCGGCGAACTCCGATCGCCAAACCGCGAGTGCCGGTTCTGCATCCACCACCAGTGGCTCCTCTTCTGCTGATATGGTGGCAGGCTTCAGCAGCGGCACCGGAGTGCCACCGTCCCTTAGATTCATGGCTCCATTGCATCAATTCAGTGATCAACACCTTGGTGGTGGTGGTGGAGGAGGAGGAGGAGAGATAGGGTTAAACTATGGCTTGAGCTATGGAGCAATTTCAGGTCCAGTGGGAGGAATAGGAGACTTGAATTTCCATATAGGAAGCACTTTGAGTGGTGGTGGTTCTATGTTGTCTGGTTTAGACCAATGGAGGGTGCCACAAACCCACCAATTTCCTTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGATTGTACCCATTTGAAGGTGCTACTGGTACTGATGCCTATGGTGGAACTCCCATTAAGGTTTCAACTTCTGGGGTTATGTCTCAGCTTGCTTCTGTTAAAATGGAAGACAATCATCATCAAGAACTTGGTTTGCCTAGACAGTTCTTGGGAATCAATAACAATCCTAATGCAAATGAACAATATTGGAGTGGTGGTGGTGGTGGCACTTCTGCTTGGACTGATGTTTCTGTTTTCAGCTCTTCTTCCACCACTAGTAACGCACTATAGAGTTTTTAGCTTTGTGAAGTTTCTGGCTTTTGGTTCTTCTGTTTCCTTTGACAAAGTTTCAACCTACTCGGTCATAATTAGCCCCACGTGAGAAGCTTCGAGGATGGTTAAGTACTTTGCTTTCTTTTAAGATCAAATGAAAACCCTAGGGATGTTAGATCTTCTTCTATGTTCCCCCCACTTTTAATCTTTATATGTTGTTATTTTATCTTCTTTTTGCTTCCTTTTATTAGGTTTAGGTTGCTTTGTATGGGAAGGTTTACTACATCGTGAAATTATGAGTTTAAAAGAATGAATATTGCAGTAGCTGATCGAAGATGTCTGATGATGGGTTACCACTTGATTGCAAC 1580 0.4684 MVYTSIPAYIDPANWQQQQPNHQQHGNNTAASSHLLLPPPIQPPPPPPSQQVHGLGGNSTTAGSIRPGSMADKARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGTSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGFSSGTGVPPSLRFMAPLHQFSDQHLGGGGGGGGGEIGLNYGLSYGAISGPVGGIGDLNFHIGSTLSGGGSMLSGLDQWRVPQTHQFPFLSGLEASSSHGLYPFEGATGTDAYGGTPIKVSTSGVMSQLASVKMEDNHHQELGLPRQFLGINNNPNANEQYWSGGGGGTSAWTDVSVFSSSSTTSNAL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02395 366 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Pste5g02395 366 MobiDBLite consensus disorder prediction 17 68 - -
Pste5g02395 366 Pfam Dof domain, zinc finger 85 140 IPR003851 GO:0003677|GO:0006355
Pste5g02395 366 MobiDBLite consensus disorder prediction 37 51 - -
Pste5g02395 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 172 IPR045174 GO:0003700|GO:0006355
Pste5g02395 366 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Pste5g02395 366 MobiDBLite consensus disorder prediction 52 66 - -
Pste5g02395 366 MobiDBLite consensus disorder prediction 130 180 - -
Pste5g02395 366 MobiDBLite consensus disorder prediction 140 179 - -
Pste5g02395 366 MobiDBLite consensus disorder prediction 17 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02395 Pste-Chr5 16432062 16433809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02395 1 359 C2C2-Dof Transcription Factor Family AT2G37590 40.270 3.66e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste5g02395 zf-Dof 4.5e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02395 5 16432062 16433809 Pste5g02395 5 16432062 16433809 ECH