Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00838 TGAAATTACAAATGGCAGAGAGAGAAAGATACCCAAACGTGTGAGAGTACATTTGGTTAAGCAAAGGCAAAAACAAAGCAGATAGAAAAAGAGAAGCAAAAGGCAAAAAGGAAGAAAGAGAAAGATCTTTTTAAGGCCACAAAGAAGTTTGTGGCTCAAATTGTAGGTAGCTTCTGATGTGGCACGCCTACCTGCTTCACCGGATCAACAACAAAACCACACTCCCACACAACGTGTCACACCCCTCTCTCTCTCTCTACACTTTTTCTCTTTCTCTCTCCACCAACTTTTTCTTTTGCAGTTTTTATTTTTATTTTCCCTTCCTCTTTGAGACAAAACAAAACCAAAAGAGATTTATTTTTTTCGCTCTTTTTTTATTAGCAAAAACAGATTACGGAAATGTCGGAGCCAAAAGACCCGGCGATCAAGCTCTTCGGGATGACGATCCCGCTGCCGGAGATTCCGCTGGGATCTGCCGGAGCCGGAGCCCTGCCTTCGTCTTCCGGCGATGTTGTTGATGACAACAGTGTTGAAGCTTCTTCCACCAACTCTTCAAGGGAGTCTCATACCAACCCAGATGCACAAGAGAAGGGTTTTGATAAGGACACTTTGGGAGAAAAACCAACTGATGATGATAAGAAGGAAGATGGAGCCCTAATCCAATCATCAGAAGAGGCTACCAATCCAGATACTTCCTCTAGAACCTGTGAAGAATCTGTTACCCTGTCCACCGAGAGGGAGCCTACTACTTTGAAAACTTCAAAGACTGAAGAAGAGCAGGGTGAGACAAGTAATGCCCAGGATAAGAACCTAAAAAAACCAGACAAAATACTACCTTGTCCACGCTGTAATAGCATGGACACAAAGTTCTGTTACTACAATAATTATAATGTCAACCAACCCCGTCATTTCTGCAAGAATTGCCAAAGATATTGGACTGCTGGGGGGACCATGAGGAATGTTCCCGTGGGTGCTGGTCGCAGGAAGAACAAGAGTTCGGCTTCTCACTATCGCCAAATAACTGTTTCTGAGGCAGCACTGCAGAATACTCAAACAGACTTGCCAAATGGAGCATATCATCCTTCCTTGAAGTGCAATGGTACAGTCCTCGCATTTGGGTCCGATGCACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAACAGTGCATAATTACACTGGAAATGGATTTCATAAACCTGAAGAACCAAGAATTCCTGTTCCTCATTCTAATGGAGAAAAGGGGGATGATCAATCCAACAAATCTTCGGTTACCTCCACGAAGTCAGTGGAAGGTGCAAGCACCAATGGACCCCGAGAACAAGCAATGCAGAATTTTCAGAGCTTCCAGCCGCAGGTTCCCTACTTTCCTGGGACCCCTTGGCCAATTCCATGGAATCCAGTGCAATGGGGTTCACCAGTACCACCGCCTGCTTTTTGCCCACCCGGATTTACCGTGCCATTCTATCCTGCGACAACTTATTGGGGTTGTGCTGTGCCAGGCTCGTGGAACATACCATGGTTAGTGCAGCCATCATCATCATCAAATGCTGCAACACCTAACTCTGGCCCCAACTCCCCAACCTTGGGTAAACATTCAAGAGAAGACAACACATTCAAACCAAATGAGTCAAGTGGTAAGGATAGACACGGCAAAGAAAATAACAAAGACAAGAACCTGTGGGTTCCAAAAACTTTGAGGATTGATGATTCAGGAGAAGCTGCAAAAAGCTCTATATGGACAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTGGGGGTGGACTCTTTAAAGCATTCCCTTCAAAACAAGATGAAAAAAATCATCCAATGCAAGCCAATCCAGTCTTGCAAGCCAATCCAGCGGCGTTGTCAAGGTCACTTAACTTTCAGGAGGCCTCATAATCATATAGTTCATAAATTGTAATTGTGCTTTTAGGTGCAGCAAACTGATTTGGCAGTGTCCAACCGGTCCTGAGGGAAACACAAGCTGTAAAACCACATTCGTTCACTTGCCTTGTTTGTAAGAAGTATTTTCTGTTGTCTGCCAACTGAAGAAAGAGTAGGATGGTTCGTCATGCATTTCCTTCTAAGGTGAAAGAGAATTCATGTGTTTGCTGAGTATATCCCCTATCTTAGTTGACATCTAGGGAGTTTTACCCTCTTCCTTTTCATTCAGA 2198 0.4409 MSEPKDPAIKLFGMTIPLPEIPLGSAGAGALPSSSGDVVDDNSVEASSTNSSRESHTNPDAQEKGFDKDTLGEKPTDDDKKEDGALIQSSEEATNPDTSSRTCEESVTLSTEREPTTLKTSKTEEEQGETSNAQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHYRQITVSEAALQNTQTDLPNGAYHPSLKCNGTVLAFGSDAPLCESMASVLNLADKTVHNYTGNGFHKPEEPRIPVPHSNGEKGDDQSNKSSVTSTKSVEGASTNGPREQAMQNFQSFQPQVPYFPGTPWPIPWNPVQWGSPVPPPAFCPPGFTVPFYPATTYWGCAVPGSWNIPWLVQPSSSSNAATPNSGPNSPTLGKHSREDNTFKPNESSGKDRHGKENNKDKNLWVPKTLRIDDSGEAAKSSIWTTLGIKNDKADSVPGGGLFKAFPSKQDEKNHPMQANPVLQANPAALSRSLNFQEAS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00838 507 MobiDBLite consensus disorder prediction 456 490 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 404 431 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 383 431 - -
Pste5g00838 507 ProSiteProfiles Zinc finger Dof-type profile. 145 199 IPR003851 GO:0003677|GO:0006355
Pste5g00838 507 MobiDBLite consensus disorder prediction 88 116 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 264 309 - -
Pste5g00838 507 ProSitePatterns Zinc finger Dof-type signature. 147 183 IPR003851 GO:0003677|GO:0006355
Pste5g00838 507 MobiDBLite consensus disorder prediction 273 287 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 36 56 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 383 403 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 18 142 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 288 309 - -
Pste5g00838 507 MobiDBLite consensus disorder prediction 57 87 - -
Pste5g00838 507 PANTHER CYCLIC DOF FACTOR 2 1 506 IPR045174 GO:0003700|GO:0006355
Pste5g00838 507 MobiDBLite consensus disorder prediction 117 142 - -
Pste5g00838 507 Pfam Dof domain, zinc finger 142 199 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00838 Pste-Chr5 5303561 5307211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00838 6 507 C2C2-Dof Transcription Factor Family AT5G39660 44.867 5.88e-114 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste5g00838 zf-Dof 2.2e-32 No_clan