Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00591 CAACACAAAACGCTTTACTCTCTCTCTAGGGTTCCAAGTTTAAACTTGAAAGTCTTCAACTTTCTCTTGCTTTTCACAAATTTGGTTGCACTTGCAACTGACCCTGGAAAGAGGGATCACCAGACAAACGAGAGAGGAGGAAGAGGAAAGAGAAAAGAAAAAATAATAAGGATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACCTTTGCAAAGAGGAGAAACGGTCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGTTCTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAAGAGCTCGAGAGCAGCTACCGGGAATACTTGAAGCTGAAAGCAAGATTTGAATCCCTTCAAAGGACCCAAAGAAACCTTTTAGGGGAAGACTTGGGCCCTCTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTAGTGGAAGCTAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCCCTATAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATTTGGTGGTCCACAGAATTCTCACTCTCAAGGCTTCTTCCAGCCATTGGAATGCAATCCCACATTGCAGATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGACCAGATAACTACCACAACTCAAGCTCAACAAGTGAATGGCTTTATTCCAGGGTGGATGCTTTGAGGTAATTAAGAGTATTCAGCTGGAGACAAAAGCAAACGTCTCTTAAAACGGCAAAGCTTAATGCTTTTCGGTGTTGGCAAGGTGTAAATGCAACCATGCTTCTGTTATTTTTATTTTGGTATAAGAAACAACTATGACTTGTTCAAACTTTTGAACCTTTAGCCATAGACATATGGCATGTAAGAAATTTATAACATTGATTATCTTTTGAAGGAGCCTTTTTTCATTATTAAAATATTTGAACATCCGGTTACAATTTTAATTTTCTT 1187 0.4094 QHKTLYSLSRVPSLNLKVFNFLLLFTNLVALATDPGKRDHQTNERGGRGKRKEKIIRMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNPYRQSWEAGDQSMPFGGPQNSHSQGFFQPLECNPTLQIGPDYRYNAVASDQITTTTQAQQVNGFIPGWML 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00591 305 Gene3D - 70 140 IPR036879 GO:0003677|GO:0046983
Pste5g00591 305 CDD MADS_MEF2_like 59 133 IPR033896 GO:0000977|GO:0045944
Pste5g00591 305 ProSiteProfiles MADS-box domain profile. 58 118 IPR002100 GO:0003677|GO:0046983
Pste5g00591 305 FunFam MADS-box transcription factor 1 70 144 - -
Pste5g00591 305 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 67 114 IPR002100 GO:0003677|GO:0046983
Pste5g00591 305 ProSiteProfiles K-box domain profile. 144 234 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste5g00591 305 PANTHER SERUM RESPONSE FACTOR HOMOLOG 60 226 - -
Pste5g00591 305 Pfam K-box region 142 228 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste5g00591 305 SUPERFAMILY SRF-like 59 133 IPR036879 GO:0003677|GO:0046983
Pste5g00591 305 ProSitePatterns MADS-box domain signature. 60 114 IPR002100 GO:0003677|GO:0046983
Pste5g00591 305 SMART madsneu2 58 117 IPR002100 GO:0003677|GO:0046983
Pste5g00591 305 Coils Coil 181 201 - -
Pste5g00591 305 PRINTS MADS domain signature 80 95 IPR002100 GO:0003677|GO:0046983
Pste5g00591 305 PRINTS MADS domain signature 60 80 IPR002100 GO:0003677|GO:0046983
Pste5g00591 305 PRINTS MADS domain signature 95 116 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00591 Pste-Chr5 3808266 3818829 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste5g00591 K-box 1.1e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00591 5 3808266 3818829 Pste5g00591 5 3808266 3818829 ECH
Pste9g00226 9 960671 966951 Pste5g00591 5 3808266 3818829 PCT