Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00587 TAACATTCTGTTCATCTTTTTCAGTTAACTCTCAGCAACCAAGATGGGAAGGGGTAGAGTTCAACTGAAGCCAATCGAGAACAAAACAAGCCAGCAAGTCACCTTTTCCAAGCGCAGATCAGGGCTTCTCAAAAAAGCCCACGAAATCTCTGTGCTCTGTGATGCTCAAGTTGCTTTGATTATCTTCTCTACCAAAGCCAAACTTTTTCAGTACTCCTCTCAACGCAGCGTGGAAGACGTCCTGGAACGTTACGAGAGATATAGCCATACAGCACTTGGTGGTGCTACCAATGAATCACAGGGAAATTGGTCTTTTGAATATATGAAGCTCACCGCTAAAGTTGAAGTCTTGGAGAGGAACATAAGGAATTACTTGGGAAATGATTTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGTATCAGATCAAGAAAGAACCAAGTTATGAATCAATCAATCTCAGAACTGCATAAAAGGGCTAGGGCATTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGCGATGACAGTGACTGAAGGTGCTCAGAGTGGCCCAGAAACTCCAAGCCAAAATGCAAGGACCCTCAACATATCTTCTTCACAGCTACTACAAGCACCACAAAGACTGCTTCCCTCTCTAACTCTCAGCGGGACATTAGGAAGAGCAGCGATGGAAGAAACGGGTGAGGCTAAAGCATCCCCAACCCTAAGGCCAAGAGCCAACTCTCTCATCCCACCATGGATGCTGCATATC 793 0.4515 MGRGRVQLKPIENKTSQQVTFSKRRSGLLKKAHEISVLCDAQVALIIFSTKAKLFQYSSQRSVEDVLERYERYSHTALGGATNESQGNWSFEYMKLTAKVEVLERNIRNYLGNDLDPLSLKELQSLEQQLDTSLKRIRSRKNQVMNQSISELHKRARALQEQNSKLAKMKEKAMTVTEGAQSGPETPSQNARTLNISSSQLLQAPQRLLPSLTLSGTLGRAAMEETGEAKASPTLRPRANSLIPPWMLHI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00587 250 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pste5g00587 250 Coils Coil 93 113 - -
Pste5g00587 250 Coils Coil 120 169 - -
Pste5g00587 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Pste5g00587 250 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste5g00587 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste5g00587 250 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pste5g00587 250 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Pste5g00587 250 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste5g00587 250 MobiDBLite consensus disorder prediction 172 191 - -
Pste5g00587 250 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pste5g00587 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste5g00587 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste5g00587 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste5g00587 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste5g00587 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00587 Pste-Chr5 3774892 3785806 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste5g00587 K-box 9.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00587 5 3774892 3785806 Pste5g00587 5 3774892 3785806 ECH
Pste5g00587 5 3774892 3785806 Pste9g00237 9 1011737 1017434 PCT