Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00258 ATCTCTTTCTCTTTCTCTGCAACTCTCTCATGTTGATGTGATTCTCCACCCATCATACTTTTACAAAGAGAAACAAACCTCTCTAATTAACAAGAGCTATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGGAATCTAATGAGGGAGGAGGAATTGGCAGCCAGCAGATTGTGGCGGTAGGGGTGGGTGGCGGGTACCAAGGGTCAATTAGGCCTGGATCAATGGCTGATAGAGCCAGGATGGCTAAGATACACCAACCTGATGCAGCACTTAAATGTCCACGATGTGAATCTACCAACACCAAGTTTTGCTACTACAATAACTACAGCCTCTCACAGCCTCGCCACTTTTGCAAGACTTGCCGTCGTTACTGGACCAGAGGAGGTGCACTGAGAAACGTTCCAGTTGGAGGTGGCTGTAGAAGGAACAAAAGAAACAAAGGGAACACTGCTAGATCAAAATCTCCTATTAAACCTTCAACCTCAGCAAGTGGTAATTCTTCTTCCAGTGGCTGCACCACTGATCATCTGATGATCACTCACTTGCCAACTCCAACACCAACTCATTTCCCATTCTTGGCCTCTTTACATCATTATAACAGTGACTACGTTTCTGGGGGCATTGGATCTCAGTTTGGGGCTATCACAACACCTTTGGTGGCTAGAAATGGCAACACTAGTGATGTTGAGTTTCAAATTGGTACTAGTTCTGCTTCATCACTTGGTAATAGTGGAGGGACTATGTTGTTAAATAATGGCCTGGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAGCATCAGTTCCCTTTCTTGAGTACTAATTTGGAACCACAAATTGGGGTGTTTCAGTTTGGTGGTAGAGAAAATTATAATTCTGATCCGCCAAGTTATGCAAAGGATGGAGGTCGGTTTAATATTCGTTCTAAAATAGATTCTATTTCTAGTGCAAGTGGAATAATGCCTCAGATTAACACAATAAAACTCGAAGAAAATCAAGGTTTGAGCTTGCCAAAAAATCTCTTGATGAGTGGTTCGGGAAATGATGTACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTAGTTTCTCTCCTTCGCATAACCACTTGTTG 1142 0.4343 MVFPSLPIYLDPPNWSQQESNEGGGIGSQQIVAVGVGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGNTARSKSPIKPSTSASGNSSSSGCTTDHLMITHLPTPTPTHFPFLASLHHYNSDYVSGGIGSQFGAITTPLVARNGNTSDVEFQIGTSSASSLGNSGGTMLLNNGLGEQWRLNNLQQVQHQFPFLSTNLEPQIGVFQFGGRENYNSDPPSYAKDGGRFNIRSKIDSISSASGIMPQINTIKLEENQGLSLPKNLLMSGSGNDVLWNGSGNAWSEVPSFSPSHNHLL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00258 348 MobiDBLite consensus disorder prediction 126 145 - -
Pste5g00258 348 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677|GO:0006355
Pste5g00258 348 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677|GO:0006355
Pste5g00258 348 MobiDBLite consensus disorder prediction 109 145 - -
Pste5g00258 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 55 210 IPR045174 GO:0003700|GO:0006355
Pste5g00258 348 Pfam Dof domain, zinc finger 63 119 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00258 Pste-Chr5 1823960 1825311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00258 1 121 C2C2-Dof Transcription Factor Family AT2G37590 58.621 1.48e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste5g00258 zf-Dof 1.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00258 5 1823960 1825311 Pste5g00258 5 1823960 1825311 ECH