Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g03075 ATGGATGGAGCAGGAAGTTCAACGGACGAAACAACCACATCCTGCGACTCTCTCTCCGTACAGCCGATGACCAACACTCCAAGCCGCGGCGGCAGCGGGGCCAGCGCCGTCGTAGACCCAGATGCTTGCGGCGTTTCCGCTGAAGCCGAATCCCGGAAGCTTCCCTCCTCCAAATACAAAGGCGTGGTGCCGCAACCCAACGGTCGTTGGGGGGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGAGGAGGACGAAGCCGCCAAGGCCTACGACATCGCCGCTCATCGCTTCCGCGGCCCTGACGCCGTCATCAACTTCAAGCCTCTCGCCGCCGACCAGGCCCAATCCGACTTCCTCAACTCGCATTCCAAGTCCGAGATCGTAGACATGCTCCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGCACGCGCCGCCGACACACTGAGGCCGCGTCCATCGGCGCGTGTGACATGAAGGCGCGTGAGCAGCTCTTCGAGAAAACGGTCACCCCGAGTGACGTCGGGAAGCTGAATCGATTGGTGATACCCAAGCACCACGCGGAGAAGCACTTTCCGCTGGGTGGCGCCGTTGGAGGATCCGGTGACGGAGCGTCGCCGTGCGCGGCACCGGCGAAGGGAGTGCTGTTGAACTTCGAGGACGTTGGTGGAAAAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTTCTTACCAAAGGATGGAGCCGGTTTGTGAAGGAGAAGAATCTTCGGGCCGGTGACTCGGTTCGGTTTTCCAAGTCGACCGGACCGGACCGGCAGCTTTATATAGACTGCAAGGCAAGGAGTAGCGGCGGTGTTGGTGAGATTAATAACAGTAATGCAGACGGTTTATTTATTCCGGTTGTTGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTGAACCTTTTGAAACGACCCGGTACGGATGGTGTGGGGGTTGGGTGTGACGGGAAGAGGAAAGAAATGGAACTGTTTGCACTAGAATGCAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1074 0.5754 MDGAGSSTDETTTSCDSLSVQPMTNTPSRGGSGASAVVDPDACGVSAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDIAAHRFRGPDAVINFKPLAADQAQSDFLNSHSKSEIVDMLRKHTYDDELQQSTRRRHTEAASIGACDMKAREQLFEKTVTPSDVGKLNRLVIPKHHAEKHFPLGGAVGGSGDGASPCAAPAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDSVRFSKSTGPDRQLYIDCKARSSGGVGEINNSNADGLFIPVVEPVQMVRLFGVNLLKRPGTDGVGVGCDGKRKEMELFALECSKKLKVIGAL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g03075 357 CDD AP2 57 112 IPR001471 GO:0003700|GO:0006355
Pste4g03075 357 ProSiteProfiles AP2/ERF domain profile. 58 113 IPR001471 GO:0003700|GO:0006355
Pste4g03075 357 FunFam AP2 domain-containing protein RAP2.8 57 114 - -
Pste4g03075 357 MobiDBLite consensus disorder prediction 1 32 - -
Pste4g03075 357 SMART B3_2 172 286 IPR003340 GO:0003677
Pste4g03075 357 Pfam B3 DNA binding domain 172 277 IPR003340 GO:0003677
Pste4g03075 357 Pfam AP2 domain 57 105 IPR001471 GO:0003700|GO:0006355
Pste4g03075 357 ProSiteProfiles B3 DNA-binding domain profile. 172 287 IPR003340 GO:0003677
Pste4g03075 357 SMART rav1_2 58 119 IPR001471 GO:0003700|GO:0006355
Pste4g03075 357 CDD B3_DNA 171 269 IPR003340 GO:0003677
Pste4g03075 357 SUPERFAMILY DNA-binding domain 57 113 IPR016177 GO:0003677
Pste4g03075 357 Gene3D - 161 292 IPR015300 -
Pste4g03075 357 SUPERFAMILY DNA-binding pseudobarrel domain 170 283 IPR015300 -
Pste4g03075 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 53 331 IPR044800 GO:0003700
Pste4g03075 357 MobiDBLite consensus disorder prediction 1 60 - -
Pste4g03075 357 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g03075 Pste-Chr4 22298504 22299577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g03075 6 356 RAV Transcription Factor Family AT1G13260 57.373 7.55e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Pste4g03075 B3 1.7e-26 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g03075 4 22298504 22299577 Pste4g03075 4 22298504 22299577 ECH