Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g02670 ATGTCTCCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTTTGTTACTACAATAACTACAGCTTAACTCAACCAAGATACTTTTGCAAGGGATGCAGAAGGTACTGGACCAAAGGAGGGTCTCTCCGCAATGTGCCTGTTGGTGGTGGCTGCAGGAAAAACAGAAGAGGTAACAAAACCTTATTGAGACAATCCATTGATGGTTTCACTTTCAAAAACTCATCATCATCATCTTGTAGAAATGCTGCAGATCATAATAATAACCCTTATGATCCTAGAATAAGGTCTTCAGCATCTAGCTCCTCCTCAGTGGTCATTGATGGACCTAATATTGATCTTGCATTAGTTTATGCAAATTTTCTCAACCAAAAGCCCAATTCTGAAGCTGGGCTAGAGAGTAATAATCCAGATCAAGTGCAAACAGGGTTTGATCCTTATCGAGAAAATAGTTCAAGACTAACAAACACAGATGTTGGCACAAGTACTTTGCCCGAAGAACTAGGTCTTACTGGATGTTTGAATCTTCCTGAACAACCATCTACACATTCTGGTGAGGCTAATAACAATAATCAAATATGTTATGGTGAGTTCCACACAAGGCAGACGCTTCAGAAAGATGGAATTGAGCATTGTAGTAGTCATGCTGGTGCTATGAATTTTGAGCTGCCTCCATTGCCGGGTGAAGAGGAAGCATCACATGATCATATGATGTGGAACAATTCTGGGATGATGATAAATCATCATGCATTTCAAGTCTCTCAACCGCCACTATTAGGACCTGAAGTTCACGATGCTGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCAAGAGATGCTTCTTTTTCTGGACCTTGA 864 0.4074 MSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKNSSSSSCRNAADHNNNPYDPRIRSSASSSSSVVIDGPNIDLALVYANFLNQKPNSEAGLESNNPDQVQTGFDPYRENSSRLTNTDVGTSTLPEELGLTGCLNLPEQPSTHSGEANNNNQICYGEFHTRQTLQKDGIEHCSSHAGAMNFELPPLPGEEEASHDHMMWNNSGMMINHHAFQVSQPPLLGPEVHDADLLIGNWSPFDLPRDASFSGP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g02670 287 ProSiteProfiles Zinc finger Dof-type profile. 3 57 IPR003851 GO:0003677|GO:0006355
Pste4g02670 287 Pfam Dof domain, zinc finger 4 57 IPR003851 GO:0003677|GO:0006355
Pste4g02670 287 ProSitePatterns Zinc finger Dof-type signature. 5 41 IPR003851 GO:0003677|GO:0006355
Pste4g02670 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 178 IPR045174 GO:0003700|GO:0006355
Pste4g02670 287 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g02670 Pste-Chr4 18923874 18924737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g02670 1 282 C2C2-Dof Transcription Factor Family AT3G52440 39.932 2.87e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste4g02670 zf-Dof 8.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02670 4 18923874 18924737 Pste4g02670 4 18923874 18924737 ECH
Pste5g02456 5 17106754 17107515 Pste4g02670 4 18923874 18924737 PCT