Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00861 ATGCATAATAAGGACGCTTGCTCTCCCTCCTCCAACGGCGGATTTGGCGGCGCCTCCGCCGGTCAAATGCCGTCAAGCGGCAGCGTCTACAGTTCGCTGTACTCGGCTCTGTCGAACGAGAACCTTCCGTCGCTCTCCGCGAACTGCAGCAACGGCGGCGGCGTTTCGCTGTACCCGTACTCCGAGTCGGCAACTCAGTACGACTCGTGCGTGATCCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTCGTGGAGACTTCCAAAGAGGTAGAGGCTCTGAGGCAGGAGAACGGTCAGCTCCGTGCCGCGAACAAGGAGCTGCAGAAACAGCTGCACCTCGTAATTCAGGCGTCGCTGGAGAATCACTTCGGCGGCGGCGGCTCCTCCGGCCAGCCGCAGCCAACTCTGTTCGATGTCTTGCATGGCTTCCGCGGCCTCCACGTTGGGGAGGGGAAAGAGAACTGTGCCGATTGGAATAACAACAACAATAATCATAACAATATTATGAATAATAATAATAATAATAATAATAACAAGGAGCTGCAGGAAACTTCAGACGAGAGTCCAACGAGCGTGATGGAAAATAACGTGGTGGAAGTGGAGAGGTTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCGGCTCTTACCACCAACAATAATGCCTCTCGCAACAAAGGCGCCTCTCGCCCACGCGCCTCCGCCACGCCACCTGAAGCCGACCCATTAGCTCAAGTTGTTCTTAGGCACAAAAGCAGTAGCCCAGGCGTTTCTGTGACAGTTGTAACCTGTTTGGTGGCTAACATATCCTGGGCTTTAGGAGCTGTCAATTCTGCTGCTAGTGGCTTTCAGAAGGTGTATGTACGTGGAGGGCAGAAAGAGGAAGAACCTCTTGAAATGATAGTGTATAACCAAGGAATGTTCAAGACCGAGCTGTGTAATAAGTGGCAGGAAACTGGTACATGCCCATATGGAGACCACTGCCAATTTGCACACGGTATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCATATGGTCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGATCAATGAAGCTCGAAAGATAA 1224 0.5278 MHNKDACSPSSNGGFGGASAGQMPSSGSVYSSLYSALSNENLPSLSANCSNGGGVSLYPYSESATQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVEALRQENGQLRAANKELQKQLHLVIQASLENHFGGGGSSGQPQPTLFDVLHGFRGLHVGEGKENCADWNNNNNNHNNIMNNNNNNNNNKELQETSDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALTTNNNASRNKGASRPRASATPPEADPLAQVVLRHKSSSPGVSVTVVTCLVANISWALGAVNSAASGFQKVYVRGGQKEEEPLEMIVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRSMKLER 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00861 407 ProSiteProfiles Zinc finger C3H1-type profile. 322 350 IPR000571 GO:0046872
Pste4g00861 407 Gene3D - 317 355 - -
Pste4g00861 407 Gene3D - 356 392 - -
Pste4g00861 407 SUPERFAMILY CCCH zinc finger 356 390 IPR036855 GO:0046872
Pste4g00861 407 SUPERFAMILY CCCH zinc finger 319 354 IPR036855 GO:0046872
Pste4g00861 407 FunFam Zinc finger protein 36, C3H1 type-like 1 356 392 - -
Pste4g00861 407 SMART c3hfinal6 360 387 IPR000571 GO:0046872
Pste4g00861 407 SMART c3hfinal6 322 349 IPR000571 GO:0046872
Pste4g00861 407 ProSiteProfiles Zinc finger C3H1-type profile. 360 388 IPR000571 GO:0046872
Pste4g00861 407 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 348 IPR000571 GO:0046872
Pste4g00861 407 MobiDBLite consensus disorder prediction 173 197 - -
Pste4g00861 407 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 394 IPR045877 GO:0003729
Pste4g00861 407 Coils Coil 89 116 - -
Pste4g00861 407 MobiDBLite consensus disorder prediction 232 254 - -
Pste4g00861 407 FunFam zinc finger CCCH domain-containing protein 15-like 317 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00861 Pste-Chr4 6701514 6703576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00861 60 402 C3H Transcription Factor Family AT1G68200 44.798 7.18e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste4g00861 zf-CCCH 3.4e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00861 4 6701514 6703576 Pste4g00861 4 6701514 6703576 ECH