LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g00847	TGAGCCCAAAGAAATTACTATAAGAGGGTCCAGGAGAGCGCGTAGCAACCTCCCTTCTCTCTCTCTAACACACTCTCTCGATTGGGCGCCATGGAGGCCCAACCTCCAACCCCCTCAACAGCGCCGCCACCGCCGCACATGAGCTACCCGGACTCGGTGGAGTCGTCACCCCGCTCACGCAACACCGACTCCTGGGACGAGCCCTTCGCCCCTGCCTCCTCCAAGCTCCGTCTTATGTGCAGCTACGGCGGCCACATCGTCCCCCGCCCCCACGACAAGTCCCTCTGCTACGTTGGCGGAGACACCCGCATCATCGTCGCCGAACGCGCCACCTCCCTCGCCGACCTCTCCACGCGCCTCTCCAAGACTTTCTTGAACGGAAGACCCTTCTCCCTCAAGTACCAGCTCCCCAACGAGGACCTCGATTCCCTCATCTCCGTCACCACCGACGAGGACCTCGAGAACATGATCGACGAGTACGACCGCACCGCCGCCGCCGTCAAGCCCTCCCGCATCCGCCTCTTCCTCTTCCCCACCAAGCCCGACTCCACTCACTCTATCCCTCCCCAGATTCTTGACACCTCTGCCAAATCCGACGATTGGTTCCTCAATGCGTTGAACGGCGCCGGCTTGCTCAATCGCGGCTTCTCCGACTCCGCTTCTGTCAATTGCCTTCTTGGACTCGACGACGACCTCGCCGGTAACAACCTCGACCCCGCTTCCAAGGACGCCGTCGAAGCTTCCGCCGTCGCTGCCGCCGCCGCCGCCGCTGCCGCTGCTTCCCAGGCTGGATCTTTCGCCAACGGCAAGAATTTGAAGCAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACCACGTCCTCTTTTGGCTCCACTTCCTCGTCGCCGTCCCTCGCCAATCTTCCCCCGATTAGGGTTCACGTTGTGGAGGATCAGAAGGTTATGGGAATTGAGGAGCAGTTCGCCCAGATGGGGGTTGGTATCGGGCAGAAGCAGGATGAGGCTTTTGTTTTGCTCTCTTCGCCTCCTCCGCCGCCGGTGCCCGCCACCCTCTCTGCCGTCGCTGTCCCCACCCCTGTTGTTGCTGCTGATTATCATAACCGGGTTATCTCCGATGATGAGAGATCCGATCACGGTGTTCCTGTTGGGTATAGAAAGCCACCCACTCCTCAGCCTCAGCTTCAGACTCAAATTCAGTCGCAGCCACAAACACAGCCACCTGCTCCTCAATTTCAACAGAAGTCAACCGGTGGCGGCGCCGTTGCTGATTTGCCTTCCCCTGATTCTGTTTCAAGTGATAGTAGTCTTGCGAATGCATTATCGAGATCGAAACCTGCCGTCTATCAAGATCAAGTTCAGATTCAATCCGGGAATACCAGGGTCCCTAGTAACCCTGTGGATCAAAAGCTTAACGTGTCTGACCCACATGGTCGCATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTGCAACAGCAATTTGAACAGCACCAACAGCTGCAGTCTCAACCACAGCAGCAATATGAACAGCATCAACACCAGCATCAACAGCCACTACCACAACAGCAACAACAGTTTATACATGGCACACACTTCATTCACCATAACCCTGCCATTCCTGCGTACTATCCTGTATATCCTTCCCAGCAACACCCCCAGCATCCACAGGTTTACTATGTGCCTACGACAAGACAGGCGCAGGCCTACAACATATCTGTGCAGCAGGCCAATATGGGTGAATCTGCAGGGAACATCCCCTCTAGCAGGCCGCAAACTCCACCAAATCCTGCTACATTGGTTCCACAGTCTGCTACTTACAACCCCATTAGAAATGCTCCCATGCCTAAAACTGAAATGAATGCTTACAGAGCAGCAGCTGCAGGCACCCCTCAACTAGTTCAAGTTCCCACAAGCCAACATCAGCAACAGTATGTCACCTACTCACAGATGCACCATCCATCTCAGTCCATGGCTCCCAATTCTGCTGCCCCTGCCAATTATGCTTTTGATTATGCGGATCCTGCTCATGCTCAAATGTACTACTCTCAACCTTTGCCACCCTCGATGCCTTCACATTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCAGCTCAGCATCCCTCAGACAGCGTGAAGCAGCAGATAAGAACCTCACAGCCATTATAAACCGGTCCTTAGAAAAAAAAGAAACAATTTTGAGAAAAATGGGTTTGGTTTCCCTTTTAAGTTTCATATGCAGTTCCTGTTGTCATGTTCGGTAAACTGTTTGTGGTATGTATTTGAATAGAAAAATAAGAAACCGTGATCATCTTGTACTCTTTCTTGTATGTCATAATTTATATAGGAAAAATTGGTCCAAGGTTATACTGTAAAAGGTGGAGTCTGAAACATTGTATTGTGAAGTTCAAATATCAATTCCTGAAATGATTGTCATATAAATTAGCGGGTATTGTTTCTTGCTCTGTTCTTGTGATCTTTTTTGTTGTTCATGATATAAAATGTTCATTCCTGTTGACAAGTGCAATGGATGTGGTCATTTGAAGTTTTGGATTACTAGCAGTTTCTCCATGGTCCCTTATATGACCACAGCCATGTATGAAGGACCACATGTTTACACTTGTTAGTGTAGTCATACATCATATTTTGGTCTGGCCGTATATTTTCAATCCTCCTGTTGGTTTTATATGGGAAAATCTTGTTTCTGCTGATTGACTGCAGGTTTTTGTTGTGCATGAACAAACTAAAATGTCCTTGCGAGTTTTAGTTTGAATTTGTTCTTCCATTATGGAAGCTATACCTTTGAATTATCATCAGCATGTTTAAATGCATAACTAAAAGAACTATGCAATCAAGTGGATTCTTTACAGTCATTTCAAGCTGCGTAGTACGAGTTTATACAGAGATTAGGTAGTTCTATGAAAATTGATCACGCTTGAC	2961	0.4975	MEAQPPTPSTAPPPPHMSYPDSVESSPRSRNTDSWDEPFAPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLADLSTRLSKTFLNGRPFSLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAVKPSRIRLFLFPTKPDSTHSIPPQILDTSAKSDDWFLNALNGAGLLNRGFSDSASVNCLLGLDDDLAGNNLDPASKDAVEASAVAAAAAAAAAASQAGSFANGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVMGIEEQFAQMGVGIGQKQDEAFVLLSSPPPPPVPATLSAVAVPTPVVAADYHNRVISDDERSDHGVPVGYRKPPTPQPQLQTQIQSQPQTQPPAPQFQQKSTGGGAVADLPSPDSVSSDSSLANALSRSKPAVYQDQVQIQSGNTRVPSNPVDQKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQHQQLQSQPQQQYEQHQHQHQQPLPQQQQQFIHGTHFIHHNPAIPAYYPVYPSQQHPQHPQVYYVPTTRQAQAYNISVQQANMGESAGNIPSSRPQTPPNPATLVPQSATYNPIRNAPMPKTEMNAYRAAAAGTPQLVQVPTSQHQQQYVTYSQMHHPSQSMAPNSAAPANYAFDYADPAHAQMYYSQPLPPSMPSHYQTMTAAAVMMQEGSAQHPSDSVKQQIRTSQPL	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g00847	699	SMART	PB1_new	60	149	IPR000270	GO:0005515
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	399	420	-	-
	Pste4g00847	699	PANTHER	OS05G0427100 PROTEIN-RELATED	18	497	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	361	391	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	1	20	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	244	269	-	-
	Pste4g00847	699	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	65	149	-	-
	Pste4g00847	699	CDD	PB1_UP2	49	147	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	22	38	-	-
	Pste4g00847	699	ProSiteProfiles	PB1 domain profile.	45	149	IPR000270	GO:0005515
	Pste4g00847	699	SUPERFAMILY	CAD & PB1 domains	61	157	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	340	420	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	251	269	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	468	496	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	1	38	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	554	575	-	-
	Pste4g00847	699	MobiDBLite	consensus disorder prediction	677	699	-	-
	Pste4g00847	699	Gene3D	-	65	148	-	-
	Pste4g00847	699	Pfam	PB1 domain	61	148	IPR000270	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g00847	Pste-Chr4	6555589	6558760	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g00847	40	232	MAP Kinase Kinase Kinase	AT1G79570	33.163	1.71e-25	110

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste4g00847	4	6555589	6558760	Pste4g00847	4	6555589	6558760	ECH
	Pste4g00847	4	6555589	6558760	Pste9g01468	9	14277378	14279719	ECH