Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00841 TATGAATTGGAAGCAGTGTATGATGATGAGCTTATGGGTTGGCCGCACAATATGAATATGAAGAATTCAAGTAGAATGCATTGTAGAGGTGTGGATGAAAATGCAGATGAAGAGATAGAGGGGGTCCAGAGCAACGAGAGATGGGCTTATGTGAAGGTTAACATGGACGGGATTAGCATTGGTAGGAAAATTTGTGTACTTGATCACGGTGGATACTCAAGTCTGGCACTCCAATTAGAAGACATGTTTGGAAGCCAATCTGTTTGTGGATTACGATTGTTCCAACCGGGATCAGAGTACTCATTGTTATACAAGGACAGACAAGATAATTGGAGGCATGTCGGTGATGTACCATGGAAGGAGTTTATAGAATGTGTGAAGCGGTTGAGGATTGCAAACAAGAATATGGCCATTGTTTCGAGTTCATCCAGATACACCTAA 441 0.4195 YELEAVYDDELMGWPHNMNMKNSSRMHCRGVDENADEEIEGVQSNERWAYVKVNMDGISIGRKICVLDHGGYSSLALQLEDMFGSQSVCGLRLFQPGSEYSLLYKDRQDNWRHVGDVPWKEFIECVKRLRIANKNMAIVSSSSRYT 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00841 146 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 136 IPR003311 GO:0005634|GO:0006355
Pste4g00841 146 Pfam AUX/IAA family 11 135 IPR033389 -
Pste4g00841 146 Gene3D - 42 144 - -
Pste4g00841 146 ProSiteProfiles PB1 domain profile. 48 134 IPR000270 GO:0005515
Pste4g00841 146 SUPERFAMILY CAD & PB1 domains 48 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00841 Pste-Chr4 6513952 6514566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00841 43 131 B3 DNA Binding Superfamily AT1G19220 36.667 1.09e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pste4g00841 AUX_IAA 1.5e-22 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00841 4 6513952 6514566 Pste4g00841 4 6513952 6514566 ECH