Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00677 CTCACACTGAACCTTTTCCCCTAACCTTTTTCATTCTAAATAATTGTAATTATTATTGTATTCCCTCCCCTTCCCTGTAAGGGTATCCACTCTATTGGCTTCAAAATTTGTTTGGGTGTGGTGATGAGTTCAGCAGCGAACGCGGTCGGGGGCAAAACGGCAAGGGCATGTGACAGCTGCATAACGAAACGGGCACGTTGGTATTGTGCTGCGGACGACGCTTTTCTCTGCCAAGCTTGCGACTCTTCGGTTCACTCCGCCAATCCGTTGGCTCGCAGACACCAACGAGTCCGATTGAAAACGGCGTCCTATAAGTCGACCGATGAACAACAGCCTCCCACGTGGCACACGAAGAAAGCCCGAACTCCCCGACACGGGAAACATTCTCGTAGCAACAATCCTTTCCATTTGGTCCCCGAAGTGGGTTCCGAAGAGGTGAATTCCCATGATGACAACGAGGAGCAGCTTCTTTATAGGGTGCCCATATTCGACCCTTTTGTTGCTGAGCTGTATGGGACTAATAGTTCTCCTTCTTCAGTGACTTCAACTGATCAAGGAGTGGCACCTGCTGTTGCGGCCGAGGTTCAAAACAAAGACATTCACAGCAATGTTTTCTGCGATATGGAAAACCTGCATGGGATGCTTCCTTCGGATGCAGAACTTGCCGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGTAGGGGACTCGAAAACGAGTGCGTGGGGATGGAAGAATTGGGACTTGTTGATGCTAAAGAAGAGGACTGCTCGGTGGTTAGTGGGAAGGTGAAGGTGGAAGAGGAAGAAGAGAACCCTCAGATGGATATGGATATTCATATTGCGGGGAGAGATCAATCATCGTTTGAGTTGAGCTTTGATTATGAAACGTGTGAAGAGGTGAAGGCGAAGGGAAAAGAAAACGGGAACGTTGAAGAGAATGAAGACGTGAAAAGGAACAAGATATCGTTGCAGCTAGATTATGAGGCAATAATCATCGCCTGGGCTAGTCAAAAGTCACCGTGGACCACTGCTGACAAACCAAACTTGAACCCTGATGAATGCTGGCACCAATGCGTGGCAACGGCGCTGCATCATCCTTACGGTGAAGTCGGAGGATTCGGGATTCATCCAGTGATAATAGACGGAGGCAGAGAGGCAAGGGTGTCAAGGTACAGAGAAAAGCGAAGAACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAAAAGAGACCCAGAATGAAGGGGAGATTTGTGAAGAGGGCTTCTTTTGCAGCACCATCATTTCCTTTGCTAAATAAATAAGACCTACCATTTGTTGTTTTACCATGCTACTTTAGTTATTAGTATTTAGTATTTGCTAAATACTGCTATATTTTTGCTACGTCATACGCTTTTCATTTTCGTATTCTCTTATTTCATTGTACATAACAATTTTGTTAAG 1459 0.4592 MSSAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHQRVRLKTASYKSTDEQQPPTWHTKKARTPRHGKHSRSNNPFHLVPEVGSEEVNSHDDNEEQLLYRVPIFDPFVAELYGTNSSPSSVTSTDQGVAPAVAAEVQNKDIHSNVFCDMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEELGLVDAKEEDCSVVSGKVKVEEEEENPQMDMDIHIAGRDQSSFELSFDYETCEEVKAKGKENGNVEENEDVKRNKISLQLDYEAIIIAWASQKSPWTTADKPNLNPDECWHQCVATALHHPYGEVGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPSFPLLNK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00677 398 MobiDBLite consensus disorder prediction 60 94 - -
Pste4g00677 398 SMART bboxneu5 11 58 IPR000315 GO:0008270
Pste4g00677 398 CDD Bbox1_BBX-like 15 58 - -
Pste4g00677 398 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 387 - -
Pste4g00677 398 Pfam CCT motif 343 385 IPR010402 GO:0005515
Pste4g00677 398 Pfam B-box zinc finger 13 56 IPR000315 GO:0008270
Pste4g00677 398 ProSiteProfiles Zinc finger B-box type profile. 11 58 IPR000315 GO:0008270
Pste4g00677 398 ProSiteProfiles CCT domain profile. 343 385 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00677 Pste-Chr4 5144583 5146340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00677 1 385 C2C2-CO-like Transcription Factor Family AT1G25440 46.667 3.30e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste4g00677 zf-B_box 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00677 4 5144583 5146340 Pste4g00677 4 5144583 5146340 ECH