Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00627 ATAAAAAGAGGTTTTCTCTTCACACTTGTTGCGCCTTCGCCTCACCCTCTTCTCTCCGTCGCTGTTAGGGTCTTCGGATCGGTGCAACTTGACCGTGCCGGCGTCAATTCCGACGCTGCTCCTGCCTCCGAATTGCGTTAGCGCTCACGAATATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATTGAAGTGAAGCCGCAAGACATGGTTTCTGAAGTCAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTAAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAGAATAGTTTTATTGTAATTATGCTATCAAAGAGTAAGAGCTCATCTGGTGAAGGATCTACTACATCAACTGCACCATTAACCAAGGCCCCACAGACAAGTGCAGCTCCTACTTCAACCCCGCCAGTGTCAGGAGCACCTCAACCTCCTGCTCCTGGGGTGCCGCCTGCATCTGTTACTGCACCTGTATCTTTACCTTCTCCAGCTCCGGCTCCGGCTCCAGCCCCAGCCCCAGCTCCAGCTCCAGCTCCAGCTCCTACTTCTATATCTTCTGAAACTGCTGTGGAAGGGTCGGATATCTATGGGCAGGCCGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTATGAGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCTCGAGCACCTGCAAGTGTTCAGCCAAATCCTCCTGCCGCTGCTCCACAAACAGCACAACCTGCTCCAGTTACCTCGACTGGACCTAACGCCAACCCTTTAGACCTTTTTCCCCAGGGTCTTCCCAATGTGGGTTCTGGCGCTGCTGGTGCTGGTTCATTAGATTTTCTGCGCAACAGTCAACAATTCCAAGCTCTTCGAGCCATGGTGCAAGCTAATCCACAAATATTGCAGCCTATGCTACAGGAGCTTGGCAAGCAAAATCCTCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGTCTGATAAATGAGCCTGTGGAAGGTGGTGAAGGGAACATATTGGGGCAGCTGGCTGCAGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCGATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCATGTAACAAAAACGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAGATCTCCATTCGAATTTGCCAAATTATTTCTTGTCCTCTTTTTTCTCTCGATGGGTCTTTGTTACACTCAATGTTTAATGAAGTAATGTTTGATAATGACAAATCTCAAGTGGATGAGGGGTGTTTTAGTCTCATTATTATTGCCCTTGTATTTATCGTTTCCTGCCCATCGAGGGTTTCTTAGTATTTCATATACATAGTTGTTTGCCTTGTATTATTGGTCTATTGTGCATCCTTTTAACACGTGTAATTGTGCGTGCTTTTATTCGCAACAAGTCGATTAATGGCTAATTCACTTGTAAGTTGGGTTTGGTCTAATTAGAAAATATAAATGAGATATGATTAAAAT 1733 0.4616 MKVFVKTLKGTHFEIEVKPQDMVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKSSSGEGSTTSTAPLTKAPQTSAAPTSTPPVSGAPQPPAPGVPPASVTAPVSLPSPAPAPAPAPAPAPAPAPAPTSISSETAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRAMRAAYNNPERAVEYLYTGIPEQAEAPLVARAPASVQPNPPAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAAGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00627 410 Gene3D - 275 340 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste4g00627 410 Gene3D - 357 404 - -
Pste4g00627 410 MobiDBLite consensus disorder prediction 235 260 - -
Pste4g00627 410 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 398 - -
Pste4g00627 410 SUPERFAMILY UBA-like 176 230 IPR009060 GO:0005515
Pste4g00627 410 FunFam UV excision repair protein RAD23 homolog 356 404 - -
Pste4g00627 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 362 403 IPR015940 -
Pste4g00627 410 FunFam UV excision repair protein RAD23 B 275 340 - -
Pste4g00627 410 MobiDBLite consensus disorder prediction 77 106 - -
Pste4g00627 410 CDD Ubl_Rad23 1 74 - -
Pste4g00627 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 177 220 IPR015940 -
Pste4g00627 410 Pfam XPC-binding domain 284 339 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pste4g00627 410 FunFam UV excision repair protein RAD23 homolog 172 222 - -
Pste4g00627 410 NCBIfam UV excision repair protein Rad23 1 408 IPR004806 GO:0006289
Pste4g00627 410 MobiDBLite consensus disorder prediction 107 150 - -
Pste4g00627 410 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Pste4g00627 410 Gene3D - 1 80 - -
Pste4g00627 410 MobiDBLite consensus disorder prediction 77 159 - -
Pste4g00627 410 PRINTS DNA repair protein Rad23 signature 376 390 IPR004806 GO:0006289
Pste4g00627 410 PRINTS DNA repair protein Rad23 signature 310 332 IPR004806 GO:0006289
Pste4g00627 410 PRINTS DNA repair protein Rad23 signature 359 375 IPR004806 GO:0006289
Pste4g00627 410 PRINTS DNA repair protein Rad23 signature 391 406 IPR004806 GO:0006289
Pste4g00627 410 Gene3D - 172 222 - -
Pste4g00627 410 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pste4g00627 410 SUPERFAMILY XPC-binding domain 281 346 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste4g00627 410 SMART ubq_7 1 75 IPR000626 GO:0005515
Pste4g00627 410 CDD UBA1_Rad23_plant 173 222 - -
Pste4g00627 410 FunFam UV excision repair protein RAD23 1 80 - -
Pste4g00627 410 SMART uba_6 179 219 IPR015940 -
Pste4g00627 410 SMART uba_6 365 402 IPR015940 -
Pste4g00627 410 SUPERFAMILY UBA-like 346 407 IPR009060 GO:0005515
Pste4g00627 410 Pfam UBA/TS-N domain 182 217 IPR015940 -
Pste4g00627 410 Pfam UBA/TS-N domain 365 400 IPR015940 -
Pste4g00627 410 SMART CBM 282 325 IPR006636 -
Pste4g00627 410 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00627 Pste-Chr4 4764966 4769250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00627 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 9.74e-08 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00627 4 4764966 4769250 Pste4g00627 4 4764966 4769250 ECH