Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04139 TTGTTTTGCAGTTTGCACTGTATCTACGTGTCCACACTTGATAAGTCTCTTCACACATCTTATTAGACTCTCTCTGACTACCTTTCCTGCAACACAAACCAAACACGACCTTAACGATTTCAGCAGCAGCAGCAGCAGCAGCGACAATGGCCGGCGAGCTCGCCGGAGACCACACGCCGGAGCTTCTCTGTCTGGTTCACGACATCGCCGGAATGTGCTCCGCCGGCTCCTCCTCCGCCGCGCCCGTTGCCGCCGACGCAATGTTCCGCAAGGACTGCACCGATCTCGTTCGCCGGATCTCACTCCTCACACACTTGTTCGAGGAAATTAAGGACCTCAACCACAACGTTGTTCTCGGTTCCTCTTCTTCTTCTTCTTCAACTTCTTCAAATTCGTGGTCTTCCGATCTGGTTCTCGCTCTTCATTCCGCAAGACGCTTGCTTTCCGTTGCTAGAGACTTCCGTTCCAATTGCTCCTCTGATGGAGCTGCAAAGGCCATTGTCTTCCAGTTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGCAATTTGCCGTATGACAATTTGGACATCTCAGAAGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAATTGAGACGAGCCACGGATAAATATGGGTTTATGATTTCAAAGATGCCTTCTCATGAATCATACCAGCCACTGACTGAAGAAATTAGTCAGGTTCTTGGCAAATCTGTGAGTGGGGGGTTGTACAAACAACACAGCTGCCCTGAAAATTTGTCAGAACTAGACAGCATTCCTGTCAACAATGGAGAGAAAAGTTGCAGCACAATCCCGGCCGGATCGCGCTTGGAAAGGGCTAGGAGCATCCCTTCTGATGTTTCCTTATTGAATGCAACTGATCCTGAAAGTCAAGAAAATTCTGAGACAAATAGTCTGTCTGAGGTTAAAAAGCCTGAACCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTCGCCACTGGTCAGACATACGAGAGATCTTACATTCAGAGATGGATAGATTGTGGAAATGCCACATGTCCGAAAACTCAGCAGAAGCTCCAACATCTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACTACATTGAGCAGCCAACAGGACTAACCAATGGAAAAATAAAGAAGAGTGATGGATCATTCAGAGATGTTACTGGTGACATAGCAGCAATTGAAGCTCTGGTTCGCAAGCTTTCAAGCCGATCTGTTGAGGAGCGTAGAGCAGCTGTTACTGAAATCCGGTCACTATCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACGTCAGAAGATGTATTGACTCAAGACAATGCAGTTACTTCAATTCTCAACCTTTCCATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCTATTGTCCAAGTCCTCCGATCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGTGCCTCAGGAGCTATACCTGCTTTGGTTGAATTGCTCCAAAATGGGAGTCCTAGAGGAAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGAGCAGGAATCATCACAGCATTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGATGAGGCTCTAACAATTATGTCAGTTCTTGCCAGCCACCAAGAGGCTAAAGTTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGTTTGCCACGCAATAAAGAGAATGCAGCTGCTATTCTTCTTGCTCTGTGCAAGAGGGATGCTGATAATCTTGCCTGTATAAGTAGACTTGGTGCTGTCATACCTCTATCTGAACTTGCTCGAGCTGGTACTGAGAGGGCCAAACGGAAGGCTACTTCATTGTTGGAGCATCTTCGTAAGTTGCAGCCACTTTGAATGATGTAGTTCTGCAAAGAACTTTTAAGTTTCTCCTTCTGTTCTCATTATTTGACATAATTGTCCACACTGCGGTTTGCATACTGAAAATCATACGAGGTGAAGTAAGAAAATCAGCCTCAAAATGATGCAGTTATTCTTTCCTTGGTTTGTTCTTTTTTAACCCCTGTATGAGCGTGTAAAGAAATTAGTATTGTTTCCTTATGAAATTCTTACACAAGTTTCTG 2326 0.4402 MAGELAGDHTPELLCLVHDIAGMCSAGSSSAAPVAADAMFRKDCTDLVRRISLLTHLFEEIKDLNHNVVLGSSSSSSSTSSNSWSSDLVLALHSARRLLSVARDFRSNCSSDGAAKAIVFQFQCVTWKLEKLLSNLPYDNLDISEEVKEQVDLVRTQLRRATDKYGFMISKMPSHESYQPLTEEISQVLGKSVSGGLYKQHSCPENLSELDSIPVNNGEKSCSTIPAGSRLERARSIPSDVSLLNATDPESQENSETNSLSEVKKPEPIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNATCPKTQQKLQHLTLTPNYVLRSLISQWCIEHYIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRSGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARAGTERAKRKATSLLEHLRKLQPL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04139 650 FunFam RING-type E3 ubiquitin transferase 349 549 - -
Pste3g04139 650 FunFam RING-type E3 ubiquitin transferase 270 345 - -
Pste3g04139 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 494 IPR000225 GO:0005515
Pste3g04139 650 CDD RING-Ubox_PUB 272 324 IPR045210 -
Pste3g04139 650 SMART arm_5 400 440 IPR000225 GO:0005515
Pste3g04139 650 SMART arm_5 523 563 IPR000225 GO:0005515
Pste3g04139 650 SMART arm_5 482 522 IPR000225 GO:0005515
Pste3g04139 650 SMART arm_5 564 604 IPR000225 GO:0005515
Pste3g04139 650 SMART arm_5 441 481 IPR000225 GO:0005515
Pste3g04139 650 Pfam Armadillo/beta-catenin-like repeat 401 439 IPR000225 GO:0005515
Pste3g04139 650 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515
Pste3g04139 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
Pste3g04139 650 MobiDBLite consensus disorder prediction 240 263 - -
Pste3g04139 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515
Pste3g04139 650 FunFam RING-type E3 ubiquitin transferase 550 649 - -
Pste3g04139 650 Coils Coil 144 164 - -
Pste3g04139 650 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Pste3g04139 650 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Pste3g04139 650 SUPERFAMILY ARM repeat 370 644 IPR016024 -
Pste3g04139 650 Gene3D - 551 649 IPR011989 -
Pste3g04139 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Pste3g04139 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Pste3g04139 650 Gene3D - 353 445 IPR011989 -
Pste3g04139 650 Gene3D - 446 550 IPR011989 -
Pste3g04139 650 SUPERFAMILY RING/U-box 269 344 - -
Pste3g04139 650 PANTHER U BOX DOMAIN-CONTAINING 39 645 - -
Pste3g04139 650 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Pste3g04139 650 MobiDBLite consensus disorder prediction 240 262 - -
Pste3g04139 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04139 Pste-Chr3 36878361 36881585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04139 38 646 U-box Gene Family AT1G23030 63.175 0.0 734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g04139 3 36878361 36881585 Pste3g04139 3 36878361 36881585 ECH