Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04125 ATTTCATCAGATCCTTTGCTGCTTCTGTCTTCCTTTTCATGTGTGTCTCCTTTTGTTTCTCCACTTTACCTTTTTTTCTCTCCTTTTTGATACAGATCCTTTTGTTCTTCTTCTTCTTCATCTTCACCATCTTTTTTGCACACCGTTTCATTATTTTCTATGGCGATTTTACCAAGTAGCTCCTCAAACTTGGATTTGACAATAGCTGTCCCTGGTTTTGCTTCTTCACCAGCCCTTCCTCCCTCATCATCTGTGAAGGATTTGGACATAAACCAAGTGCCTCTAGAAGAAGATTGGATGGTAGCAAACATGGAAGATGATGAAGATAGCAGCAATGGAGACCATCCCCGCAAGAAACTTCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGTTTTAAACAAAACCACACTTTAAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAACTGAAGCTGAGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAAATGGAGTGCGAGTATCTGAAGCGGTGGTTTGGTTCTCTGACAGAGCAGAACCGAAGGCTGCAGAGGGAAGTGGAAGAGCTCAGAGCCATGAAGGTGGGCCCACCCACCGTCATTTCCCCTCACTCCTGCCACCCATTACCAGCCTCCACACTCACCATGTGCCCCCGCTGCGAGCGCGTCACCACCACCGCCGCCGCCGACAAACCTCTCTCCACCGCTTCCTCCGCAGCCAAAGTACAGCCAGCGCCGTCCCGTCAGCAACATCCGGCGGCGTGTTGACTTTTAAACCCCACCGCATGTCGTCTTCTGCTAGCTCCTCACCTAATCATCAACAGTGAAG 868 0.4908 MAILPSSSSNLDLTIAVPGFASSPALPPSSSVKDLDINQVPLEEDWMVANMEDDEDSSNGDHPRKKLRLTKEQSRLLEESFKQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCHPLPASTLTMCPRCERVTTTAAADKPLSTASSAAKVQPAPSRQQHPAAC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04125 215 Coils Coil 133 153 - -
Pste3g04125 215 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Pste3g04125 215 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Pste3g04125 215 Gene3D - 56 127 - -
Pste3g04125 215 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Pste3g04125 215 CDD homeodomain 63 121 IPR001356 GO:0003677
Pste3g04125 215 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Pste3g04125 215 FunFam Homeobox-leucine zipper protein 18 49 125 - -
Pste3g04125 215 MobiDBLite consensus disorder prediction 187 215 - -
Pste3g04125 215 SMART HOX_1 62 124 IPR001356 GO:0003677
Pste3g04125 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 49 201 - -
Pste3g04125 215 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Pste3g04125 215 MobiDBLite consensus disorder prediction 188 205 - -
Pste3g04125 215 SUPERFAMILY Homeodomain-like 51 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04125 Pste-Chr3 36597829 36601445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04125 32 190 Homeobox Transcription Factor Family AT1G70920 64.634 1.04e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste3g04125 Homeodomain 2.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g04125 3 36597829 36601445 Pste3g04125 3 36597829 36601445 ECH