Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04051 CACCTTCTTCTCCATCACTCCCACGATCACAATAATCATCGATCTTCAAAACTTAACCAAATTCCAAAACATGACAAACCCAACACCACCAAACCTTACTCTTCATCATGGTAATTTTCTCCTATCTTTGATCCTATGTTGTTGGTTGTGTTCATCCATGGCCATGATTATGGGTGCTAGTGCCACTTACAATGTGGTCAATTTTGGCGCCAAATCAGATGGGAAAACGGACTCAACCAAAGCATTTCTCAATGCATGGGCCAAAGCTTGTGCTTCCACCAACCCTTCTTCAATTTACGTGCCACAAGGGAGGTTCTTAGTTAAAAGTGCTACCTTTAGTGGAAAATGTAACAACAAAGGTGTCACCTTTACCATTGATGGCACTTTGGTGGCTCCTTCTGATTATAGGGTCACCGGCAACGCCGGTAACTGGTTGCAATTCGAGCACGTCGACGGCGTTTCTATTCACGGCGGCGTGCTTGACGGCCAAGGCACAGCCCTGTGGGGTTGCAAGAACTCCGGTAAAGGAAACTGCCCCACCGGTGCCACGACTCTACAATTCACCAACTCAAAGAACATAGCAATTGGAGGGTTGACCTCAATGAACAGTCAACTATTTCACATAGTGTTCAATGGGTGCCAAAATGTGAAGGTGCAAGGAGTGAAGGTTCTGGCAAGTGGAAACAGCCCTAACACAGATGGAATCCATGTGCAAATGTCGTCACATGTCACCATCCTCAACTCTAAAATTCGAACAGGCGATGATTGCATCTCCATTGGCCCCGGAACCACAGACCTGTGGATTGAAAACATTGCTTGTGGACCTGGCCATGGAATAAGCATTGGAAGCTTGGGAAAGGATTTGAATGAACTTGGTGTACAAAATGTGACAGTTAAAACGGTTACATTTACTGGGACTCAAAACGGTGTTAGAATCAAGACCTGGGGTAGGCCCAGTAAAGGATTTGTGAGGAACGTGCTTTTCCAAGACGTAATAATGGACAATGTTGAAAACCCCGTTATAATAGACCAAAACTACTGCCCGGATCACAAGGGCTGCCCCGGTCAGGCTTCTGGAGTCAAAGTGAGTGATGTGACATACCAAGACATTCATGGAACATCTGCAACCCAAGTTGCTGTGAAATTTGATTGCAGTTCAAAGTATCCATGCAGTGGGATAAAAATGAAGGATGTGAAACTCACTTATAAGAACAAACCTGCTCTAGCTTCATGCAACCATGCAGATGGAAACTCTTTAGGTTCAGTTCAACCACAAAGTTGCTTTTAA 1288 0.4488 MTNPTPPNLTLHHGNFLLSLILCCWLCSSMAMIMGASATYNVVNFGAKSDGKTDSTKAFLNAWAKACASTNPSSIYVPQGRFLVKSATFSGKCNNKGVTFTIDGTLVAPSDYRVTGNAGNWLQFEHVDGVSIHGGVLDGQGTALWGCKNSGKGNCPTGATTLQFTNSKNIAIGGLTSMNSQLFHIVFNGCQNVKVQGVKVLASGNSPNTDGIHVQMSSHVTILNSKIRTGDDCISIGPGTTDLWIENIACGPGHGISIGSLGKDLNELGVQNVTVKTVTFTGTQNGVRIKTWGRPSKGFVRNVLFQDVIMDNVENPVIIDQNYCPDHKGCPGQASGVKVSDVTYQDIHGTSATQVAVKFDCSSKYPCSGIKMKDVKLTYKNKPALASCNHADGNSLGSVQPQSCF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04051 405 ProSitePatterns Polygalacturonase active site. 247 260 IPR000743 GO:0004650|GO:0005975
Pste3g04051 405 FunFam Polygalacturonase 7 30 404 - -
Pste3g04051 405 SMART pbh1 190 216 IPR006626 -
Pste3g04051 405 SMART pbh1 300 321 IPR006626 -
Pste3g04051 405 SMART pbh1 217 238 IPR006626 -
Pste3g04051 405 SMART pbh1 334 374 IPR006626 -
Pste3g04051 405 SMART pbh1 270 291 IPR006626 -
Pste3g04051 405 SMART pbh1 240 260 IPR006626 -
Pste3g04051 405 Pfam Glycosyl hydrolases family 28 67 390 IPR000743 GO:0004650|GO:0005975
Pste3g04051 405 PANTHER - 38 393 - -
Pste3g04051 405 SUPERFAMILY Pectin lyase-like 28 405 IPR011050 -
Pste3g04051 405 Gene3D - 31 403 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04051 Pste-Chr3 35120667 35124904 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g04051 3 35120667 35124904 Pste3g04051 3 35120667 35124904 ECH