LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g04002	GAAATTAAGGGGTCTCTCCCCTTTTTGTGGGTTGGATCTTGTACTTGTGGAACTGTCACATCTGACCATTTTGATTCTCTTCTGATCATCACCACCACCTGGTTAAAAAGCAAGCAACTTGGTGATCTGAATTTTGTCCCTTTCTCTTTTCTCTTCCCTTCACCGTTTTGGGGTGGGGCTGGGAGCAACATGATCGTGGAATGAGTGCATTTTGTCCTTGAAGATTTGAGGCATGTGAATTAGTTTGCTGGGTATATCAGGTTTCTGGGTCAGATTCACATCACATCAAAATTCATGGAGGAGAGGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTTGGGGGTCACATCAGGACCCATATGAGTGAGGAAAGAAGTAACAATAATGCTGCTGATGATGGTGACATGTTGGCCAAGTTTGATGGTGTGAGGAAGAGAAGGGATTTATGGTGTGAAGATGTTGCTGTGGGGAACTCTTCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGTGCTGCTGCTGCTGCTGCCACCAACTATGAACAACAGGAGGAGAGGTTCTGCAAAGAATGTGGCAAAGGTTTTCCATCACTCAAGGCTCTCTGTGGCCACATGGCATGTCACTCTGAGAAAGAGAAGAGAACCATCAAGTTTGAAGAGAGTGATAAGAAGCTCAAGTTGTTTTTGGATAGTCAATCTGACACCGAGACTTGTGCTCCATCTCATCCAAGGAGATCCAAGAGAACTAGGGTGAAGACCATTAACCTTTCCAATCACCCTTTTTTCTCTTCCTCTTCTTCTCCCTCTTCTTCTGTTGTTCCTTTGGCCAATGGCTCTTCACCTGTGTCAGAGGTGGAGCAGGAGCAGGAAGAGGTGGCAAGGTGTTTGATGATGTTGTCTAGAGATTCTAGCTTCAAGGGTCGTTTTGCTTCTGTCGCTGAATCTTCTGATAACAATTCGGTTATTCTGGAAGCAAAATCATCCTCTCCTGATACCCCAATTGGTGTCAGCAATGGTTCTAGGTGTTTCAGGTATGGTTTCAAAACCAAAATGTTAGACTCAAATGTTTCAAATGATGAATTCAGGTGGCCAAAGGTGGGGGATAAAGCAAGCAAATATACTGCAAGTGTGCTAAAGAAATTAGTGATGGAGAATTTAGATTATGATAGAACAGATGGAACTGCAAGGAGGTTTGATTCAAGAAAGAGAAGCAGCTATGATTCTCTTGGTCACAATCTAGTTGGTGTTTCTAGCAAGAAGATAGCAAATGGTTTTGACAATGAAGTATATGAGAATGGCACAAAAGGTTGGAAGTATGAGTGCTTGGAGGGCGAAAGGGACTATGGTTCTTCTGATTCAATAGAGGAGAGCCATGAGAACAGTTCAGACACCGAATCTTTTCCTGCTCCAAGGTCTCACAGCAGTAAGTCTCTCAATAAAAAGAAGTCTAACAAGGCCAAAAAGAAGTTGAAGTCTAAGAAAAACAGGGAACATGAGTGTCCAATCTGTTACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCACAAAAGATCCCATTTCATAGGAGGTTCTGAAGAAAACACTGTGTTGATCAATCAAGTTGCTCCTGTTGTTCCTTGCCTAATTGATCTCAATCTACCTGCACCTGTTGATGAATAGGGAAATTGGCATCCTTGGTTTTGCATCATTTTGAAGCATCTGCTGTTGAGGTACTTGAATGAAAGTCTC	1770	0.4311	MEERKYVCKYCSKRFPCGKSLGGHIRTHMSEERSNNNAADDGDMLAKFDGVRKRRDLWCEDVAVGNSSIYGLRENPKKTMRFVHSGAAAAAATNYEQQEERFCKECGKGFPSLKALCGHMACHSEKEKRTIKFEESDKKLKLFLDSQSDTETCAPSHPRRSKRTRVKTINLSNHPFFSSSSSPSSSVVPLANGSSPVSEVEQEQEEVARCLMMLSRDSSFKGRFASVAESSDNNSVILEAKSSSPDTPIGVSNGSRCFRYGFKTKMLDSNVSNDEFRWPKVGDKASKYTASVLKKLVMENLDYDRTDGTARRFDSRKRSSYDSLGHNLVGVSSKKIANGFDNEVYENGTKGWKYECLEGERDYGSSDSIEESHENSSDTESFPAPRSHSSKSLNKKKSNKAKKKLKSKKNREHECPICYKIFRSGQALGGHKRSHFIGGSEENTVLINQVAPVVPCLIDLNLPAPVDE	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g04002	468	ProSitePatterns	Zinc finger C2H2 type domain signature.	415	435	IPR013087	-
	Pste3g04002	468	MobiDBLite	consensus disorder prediction	363	377	-	-
	Pste3g04002	468	MobiDBLite	consensus disorder prediction	363	409	-	-
	Pste3g04002	468	SUPERFAMILY	beta-beta-alpha zinc fingers	2	32	IPR036236	-
	Pste3g04002	468	Pfam	C2H2-type zinc finger	413	435	-	-
	Pste3g04002	468	Pfam	C2H2-type zinc finger	6	31	-	-
	Pste3g04002	468	Pfam	C2H2-type zinc finger	103	125	-	-
	Pste3g04002	468	ProSitePatterns	Zinc finger C2H2 type domain signature.	8	28	IPR013087	-
	Pste3g04002	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	413	435	IPR013087	-
	Pste3g04002	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	6	33	IPR013087	-
	Pste3g04002	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	101	128	IPR013087	-
	Pste3g04002	468	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	1	468	-	-
	Pste3g04002	468	SUPERFAMILY	beta-beta-alpha zinc fingers	102	435	IPR036236	-
	Pste3g04002	468	Gene3D	Classic Zinc Finger	1	54	-	-
	Pste3g04002	468	MobiDBLite	consensus disorder prediction	390	409	-	-
	Pste3g04002	468	SMART	c2h2final6	6	28	IPR013087	-
	Pste3g04002	468	SMART	c2h2final6	413	435	IPR013087	-
	Pste3g04002	468	SMART	c2h2final6	101	123	IPR013087	-
	Pste3g04002	468	ProSitePatterns	Zinc finger C2H2 type domain signature.	103	123	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g04002	Pste-Chr3	33938065	33939951	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Pste3g04002		zf-C2H2_6	2.9e-07	CL0361

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g04002	3	33938065	33939951	Pste3g04002	3	33938065	33939951	ECH