Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g03264 CTTAGTTTGCTCTCTCACGCTTTCCCTTTCTTCTTTTCTTCATGCCCAGTACCACTTAGACACATACGCAAAAGCAGGCCTTTTGAGATTCTAATAACTCAACTCAGCTTAGTTCTGTGAATGGATCCTTCTAGTGGAATACCCCAGGTGCAGCAAATGTCTAGCCAGTCAGTGGAGAAGAAGCCAAGGCCTCATCCAGAACAAGCTCTAAAATGCCCAAGATGTAACTCTACCAGCACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATACTTCTGCAAGTCTTGTAGGAGATATTGGACAAAAGGAGGAACACTGAGGAATGTTCCCGTGGGAGGAGGATGCCGGAAGAAGAGATCATCTTCAACATCAAAGAGGGCTCAGGATCAGACATTCACACCCAATCGTAACCCACTTACTACACTGCCTCCTCTGTCTTACGACTCCAGTGATTTCACTCTAGCATTAGCTAGGTTTCAAAAACAATCAAGTGGCCAGTTGGTTTACAATGACCATGATCTTTCAATTTTGGGGAACCCCACAGGCTCCTTTTGTGATATTCTTGGCAATTCAGGCATGAATCCCACCTCAGCAGACCCTTCATTTTTGGATGCAATTCGAACTGGGTTCCTCGAGACACAAAATCATCTACAAAATTTGTTTTTTGTGTGTAGAAATGATGACATGAGGGAGGTGGATAACAGCTATACTGGTGGGGTTGGCGTTAGGGAAGAAATGATGCTCCCTTATGATCAAGTGATGAGCAATGCGGCCAATCAATCAGTGAGTGTAACTGCCATGAAGCAAGAATTGTGTAGTGGTAAAGAACATAGAGAAAGGAGAGTGATGGGTGGTTTCCCATGGCAGCTTAATGCAGACACAAACATTGGTGAATTTGATTCAGGAAGAGCAATTGCAAGTTGGAACAGTTTGACATCTTCTTGGCATGGGCTTCTCGATAGTCAATAGTCCCCTAATGTAGACCCCCCACTGCAAGCAAAATCACAAGGCACTTATTTCCTCTAATATATGTTTGACTAAAATGTTAGTCTTAATTAAACCGTCAATCCCCTTGAGTAGTTTTGGCTTAATAGGGATTTGATATATTCACTTGGATCCACTTTCTTTTCTTGTATTTTTACCTCCTTTTTTAGTTCCCCTGAACTGTCAA 1183 0.4227 MDPSSGIPQVQQMSSQSVEKKPRPHPEQALKCPRCNSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSTSKRAQDQTFTPNRNPLTTLPPLSYDSSDFTLALARFQKQSSGQLVYNDHDLSILGNPTGSFCDILGNSGMNPTSADPSFLDAIRTGFLETQNHLQNLFFVCRNDDMREVDNSYTGGVGVREEMMLPYDQVMSNAANQSVSVTAMKQELCSGKEHRERRVMGGFPWQLNADTNIGEFDSGRAIASWNSLTSSWHGLLDSQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g03264 286 MobiDBLite consensus disorder prediction 89 104 - -
Pste3g03264 286 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Pste3g03264 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 177 IPR045174 GO:0003700|GO:0006355
Pste3g03264 286 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Pste3g03264 286 MobiDBLite consensus disorder prediction 75 104 - -
Pste3g03264 286 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Pste3g03264 286 MobiDBLite consensus disorder prediction 1 30 - -
Pste3g03264 286 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g03264 Pste-Chr3 25244027 25245716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g03264 28 285 C2C2-Dof Transcription Factor Family AT2G28510 37.906 2.23e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste3g03264 zf-Dof 1.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03264 3 25244027 25245716 Pste3g03264 3 25244027 25245716 ECH
Pste3g03264 3 25244027 25245716 Pste1g02516 1 9352535 9354667 PCT