Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02643 ATGGTCTTTGTCTTTACCATTTGCACTTACATTCATCACTTTCCAATCTCCTACATAACCAACAATGTCAAACGCTCTACACCACCACCAACAACCCAGTCCCGAATCCAAACGTCTCGATCCGCCTTCCAGCTCTTCCCGCCCCGGTCACCGGAGATCGGTCTCCGCCGGAGCCCTTTTATCTACTCCGGCGCCTCCACCCTGCTCCCCACCGGCAACATCTGCCCCTCCGGGAAGATCCTCAAACCCGCTCTGCCCTCTCGCGCTCCCACTCGCTCCGACGTGTTGGGTTCCGGCACCGTTAACTACGGCCGCGGCAGCATAGTGCGCGGCGCCTCCGGCAGCTTTCCCCTGCCCGCCGCCGCATCGCCGCTTACGGTGAAGCGCGCGATGACCGGCTCCGATCCCGATGAACTCAAAATGGCTGGGAATGAGTTGTATAGAGCTGGCAACTTCGTGGAGGCGCTGGCATTGTACGATCGCGCCGTCTCCATCTCGCCGGTAAATGCCGCGTGCCGGAGTAACCGCGCGGCGGCGCTCACGGCCCTCGGGAGGCTCGGCGAGGCCGCGAGGGAGTGCCACGAGGCCGTCAAGTTGGACCCTGCTTATGCCAGAGCTCACAAGAGACTTGCCTCTCTTTATCTAAGGTTTGGGCAGGTTGAGAATTCGCGGCGGCACCTCTCTCTCTCTGCGACTCAAGAGGATCAATCTGAGGAGCAGAAGCTGCTGTTGTTGGATAAGCATTTGAATCGATGCGCTGATGCAAGAAAATTTGGTGATTGGAAGAGGGTACTTAGGGAATCAGAAGCAGCCATTGCTGTTGGAGCAGATTTTTCGCCTCAGATTGTTGCTTGCAAGGCAGAAGCTTATTTAAAACTGCACCAACTAGACGATGCTGAATCTAGTCTCTTGAACATTCCGAAATTGGAAGGCTGTCCTCCTGCATGTTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTTCCTTTCGTGTCTGCTCAGGTTGAGATGGCCTTGGGGAGGTTTGAGAATGCTGTTGTGGCAGCAGAAAAGGCTAGCCAGTTGGATTACAGTAATGTTGAAGTTGGTAGGATTGTAAATGTTGTGAAAATGGTGGCAAGAGCTCGTTCAAGGGGAAATGATCTTTTCAGCTCTGGCAAGTTCTCTGAAGCATGTTCTGCTTATGGAGAGGGTCTCAAGTATGACAACTCCAATTATGTTCTATATTGCAATAGGGCTATTTGTTGGTCTAAACTTGGACTGTCGGAAAAATCGGTTCAAGACTGCAACGAAGCTCTCAACATTCAACCGAATTACACCAAGGCCCTTTTCCGCAGGGCTGCATCAAATAAAAAGCTTGAAAGATGGGCAGAAGTTGTTAAAGATTACCAAGCCTTGAAACGTGAACTCCCTAATGACAATGAAGTTGCTGAATCTCTTCGGCAAGCTCAACTAGCATTAGAAAAATCTCGACAAGTGGTGTATGGTACTAAGTTTGGAGTTGAAGTTGAACAAATCACAGCATTAGATAAATTTAAAGCTGCGATAGCATCTGCGGGTGTATCGGTAGTTTATTTCAAGGAGGCATCAAACGAATTATGCGAGGAATTATCTCCATTCATAAATACGTTGTGTGTTAGATACCCTTCTGTGAAATTTATCAAGGTGGACGTGGAGGAGTGTCTAGCAATAGCAAAAGCTGAAAGCATAAGAAGTGTTCCAACTTTCAAAATTTATAAAAAGGGAGAGAAGGTGAAGGACATGATCCGGCCAACCCATCAGTTATTAGAGGATTCGGTAAGAAAAAGTAATAATCTCTAGATACTAGAATTCATACTCATTATTTGCATTCACATGCCACTAAAAATCATAGCAAAATTGAAGTTGGTGCTCCAAGATTGCACCAAACCCTGTTTAGTTTGAAGTAGGAATTCCAACTTTCCTTGTGATACACACATGGATACCAATTTTTCGCCGCGCTTTTAGGCAGCAAAACCCCAGAGATAGATTTTAGATAGCATTTTGAAATCATATATGTATATGTTTTGCCCAGCATCTAATGTGCTTCCTATTTCCTTCTATATATCTTGCCCAAAAGTGTTGTACTTTTTCCTTCCACATCCTTAATTTATTTTATTGTATCAGGCTTAGGAAAAAAGCTACCGTGACATATTATTGTATTAGATTTAGATCACATCAAACAGTAAAAAATGAGATCTTCCCCATGGCGATTTTGCTAGAGGAAAAGTTTGATGCTTGCAA 2268 0.4638 MVFVFTICTYIHHFPISYITNNVKRSTPPPTTQSRIQTSRSAFQLFPPRSPEIGLRRSPFIYSGASTLLPTGNICPSGKILKPALPSRAPTRSDVLGSGTVNYGRGSIVRGASGSFPLPAAASPLTVKRAMTGSDPDELKMAGNELYRAGNFVEALALYDRAVSISPVNAACRSNRAAALTALGRLGEAARECHEAVKLDPAYARAHKRLASLYLRFGQVENSRRHLSLSATQEDQSEEQKLLLLDKHLNRCADARKFGDWKRVLRESEAAIAVGADFSPQIVACKAEAYLKLHQLDDAESSLLNIPKLEGCPPACSQTKFFGMVGEAYVPFVSAQVEMALGRFENAVVAAEKASQLDYSNVEVGRIVNVVKMVARARSRGNDLFSSGKFSEACSAYGEGLKYDNSNYVLYCNRAICWSKLGLSEKSVQDCNEALNIQPNYTKALFRRAASNKKLERWAEVVKDYQALKRELPNDNEVAESLRQAQLALEKSRQVVYGTKFGVEVEQITALDKFKAAIASAGVSVVYFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEECLAIAKAESIRSVPTFKIYKKGEKVKDMIRPTHQLLEDSVRKSNNL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02643 608 Gene3D Tetratricopeptide repeat domain 134 492 IPR011990 GO:0005515
Pste3g02643 608 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 64 603 IPR044534 -
Pste3g02643 608 SUPERFAMILY TPR-like 135 363 IPR011990 GO:0005515
Pste3g02643 608 Pfam Thioredoxin 510 594 IPR013766 -
Pste3g02643 608 SMART tpr_5 442 475 IPR019734 GO:0005515
Pste3g02643 608 SMART tpr_5 408 441 IPR019734 GO:0005515
Pste3g02643 608 SMART tpr_5 136 169 IPR019734 GO:0005515
Pste3g02643 608 SMART tpr_5 170 203 IPR019734 GO:0005515
Pste3g02643 608 SMART tpr_5 204 237 IPR019734 GO:0005515
Pste3g02643 608 SMART tpr_5 374 407 IPR019734 GO:0005515
Pste3g02643 608 SMART tpr_5 328 361 IPR019734 GO:0005515
Pste3g02643 608 Pfam Tetratricopeptide repeat 141 190 - -
Pste3g02643 608 CDD TRX_family 514 599 - -
Pste3g02643 608 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Pste3g02643 608 FunFam TPR repeat-containing thioredoxin TTL4 499 606 - -
Pste3g02643 608 Gene3D Glutaredoxin 493 607 - -
Pste3g02643 608 SUPERFAMILY Thioredoxin-like 426 604 IPR036249 -
Pste3g02643 608 SUPERFAMILY TPR-like 381 449 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02643 Pste-Chr3 19363763 19367218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02643 148 221 Glycosyltransferase AT3G04240 33.784 1.13e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02643 3 19363763 19367218 Pste3g02643 3 19363763 19367218 ECH
Pste1g04052 1 22877373 22881577 Pste3g02643 3 19363763 19367218 PCT