Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02371 GCGGCGCCCTTAGTCGAATTTGACTTTTCAAAAGCTAAAATGCGGTTGGAGTGCCCATAAATGAAAGTTTAACCTCTACGACATTATATAGTGTGAACTGACCATGTACAATATTATCGCGGAGCAATAATAGCGCAAGTTCGAGGAAAGAAGAGGCGTGGAGGTGTTTGAAAATGAGAGAATATTTGTATTTGGTATTGACCGTATTAATTTTGGTTTTTCTTATTATATAAAAAATAATAAAGCAAAGCAAGACTTGCGAAAGTGAAAGAGGGCGAGTGGCAGGGAGAGGAAAAAGAAAATGGGGGCGGGGAAAGGGGTAGTTTGGGTGTGGAAAGTGATAGCGGTGGTAGCGGTGGTAGCGGTGGCGGGGTTGGCAGAGGGGCAAGCGGAGGCGAAGTTCAAGTGCAGCAGCAGGAAGACAGCGACGTGTAGGGGTGTGGTAGGGTACTCGAAGGCGAACAGCACCACACTGGGGGACATCCAAAAGCTCTTCAACGTGAAGCACATCCTTGACCTGGTTGGCGCTAACAACCTTCCCAGCAACGCCACAAGCAGATACGAGGTGGGGCCCAACGTAACTGTGAAGGTCCCCTTCCCCTGCAGCTGCACCAACAACACTGGTCTCTCCCACCGCATTCCCCTTTACAAAATCAAAAAGGGGGACACCCTCTCCGCCATAGCCACAACCACCTTCGCTGGTTTGCTCACTTGGCCGCAGATCCAGTTAGCCAATAACATACCCGACGCTAATAATATCACCGCCGGAGATACCATTTACATTCCACTTCCCTGTAGCTGCGACGATGTCGATGGCAAGAGCGTCGTGCACTATGCCCACCTCGTTCCTCCCCTGGCCACCGTCGAAGCCATTGCTCATCAGTTTGGCACCACTCCGCAGATTCTTCTCATCCTCAATAACATTTCTGACCCCAAATCCCTTCAGGCCGCTCAGATTCTTGATGTTCCCCTCACAGCTTGTTCCTCGAGTGTGAAAAATGATTCATTGGACTATCCGTTGCTTGTCGCGAATAATACTTCCGCCTATACTGCCAATGGATGCGTCAAATGCAAGTGTGACACCAGCAATTTAATATTACACTGCGAGCGGTCCCTACTCAAACCAACCAACTGGTCCTCATGTCCCTCCATGGAATGCTCAAGCAACGTCTTCATTGGCAACATCACTTCCTCTACAGGTTCTTGCAATCGCACAATCTGTGCCTATACCGGTTATACCTTCCGCAATATCTCAGCAGAACTTGTGACGGAGAACACTTGTGCGGTGCCACCCACTGATTCAGGAGGATCAACTGGTTCTGGACCTTCCGGTTCTGGAGCATCCACGAGCGCCTTGCAAGGCTTGCTTTGGAGTAATGTTTTCCTTGTTATTCACTCTGTTCTCTTTCTTATCTATGCTTTGTAGTATAAATACCCTGCACTCCTGTAGCCTTTTTTTTTTTAAAATATATATAGTCCACTCTGTAATTTTCTAAGTTCAGATAGATTGTTTTGTGTTGTGACTTGTGAGTGTCACCACAACCGAACCTTTTATGTTTTTGCTTTGCAATCTTTGTAATTTAAATAAATATGTTGTCAATAAAAAGAGTTATATCTGAACTATTTTAATGTGATGAAAATAGTTCAGACATGTTTTTTCTGTTATGTTTTTCTTTTGCAATCTTTGTAACTTGAATTCCGATTCATCCGACACAATGTAACGTAAAGTGAACCA 1735 0.4565 MGAGKGVVWVWKVIAVVAVVAVAGLAEGQAEAKFKCSSRKTATCRGVVGYSKANSTTLGDIQKLFNVKHILDLVGANNLPSNATSRYEVGPNVTVKVPFPCSCTNNTGLSHRIPLYKIKKGDTLSAIATTTFAGLLTWPQIQLANNIPDANNITAGDTIYIPLPCSCDDVDGKSVVHYAHLVPPLATVEAIAHQFGTTPQILLILNNISDPKSLQAAQILDVPLTACSSSVKNDSLDYPLLVANNTSAYTANGCVKCKCDTSNLILHCERSLLKPTNWSSCPSMECSSNVFIGNITSSTGSCNRTICAYTGYTFRNISAELVTENTCAVPPTDSGGSTGSGPSGSGASTSALQGLLWSNVFLVIHSVLFLIYAL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02371 374 CDD LysM 187 222 IPR018392 -
Pste3g02371 374 SMART LysM_2 179 223 IPR018392 -
Pste3g02371 374 SMART LysM_2 115 162 IPR018392 -
Pste3g02371 374 SUPERFAMILY LysM domain 115 163 IPR036779 -
Pste3g02371 374 Gene3D LysM domain 176 236 IPR036779 -
Pste3g02371 374 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 328 - -
Pste3g02371 374 CDD LysM 116 161 IPR018392 -
Pste3g02371 374 Pfam LysM domain 116 162 IPR018392 -
Pste3g02371 374 Pfam LysM domain 187 223 IPR018392 -
Pste3g02371 374 Gene3D LysM domain 115 171 IPR036779 -
Pste3g02371 374 ProSiteProfiles LysM domain profile. 114 161 IPR018392 -
Pste3g02371 374 ProSiteProfiles LysM domain profile. 178 222 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02371 Pste-Chr3 16817690 16820162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02371 28 317 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 46.939 8.17e-81 249