LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g02003	GGACCAACTCTTTGTTTGTACCACCCACTTCTCCTACTAGCAGTTTTTAGTTCTTACTCACTCGCGCTTCTTCAATATTTTTCATTTTCCCAATATTTTTGGTTCTCACTCGGTACCCAAGAAGCCGCTAGAAGAAGAATTAAAGAAAAAAATAAAAGAAAAAGGAGAGGAGCAGCAGCAGTAACAACCGAAGAGAGGGAAAAACAAAACAAAACAAACAGTGAAGCAGAGAGATATGCGATTACGGTGGCGGCGGCGGCGGTCAGGGTTGTTGAGTCCGGCCAATGCACCGGCTCGTTGCGGCGGAGGCCACCGGCGTTGATGGCCCTGCAGATGACTTGGCAGCCGAGTCTCCTGAGTCAGAAACGCAAAACCGGTCCTCCGTTAGGGCTTCGTAACCTAGGCAACTCGTGCTACCTCAACAGCGTTCTCCAGTGCCTCACCTACACTCCTCCCCTCGCCAATTTCTGCCTCACTCATCAACACTCCTCTCTCTGCGATTCCTCCGCGTCTTCGTGTCCGTTCTGCATTCTGGAGAAGCAGATTGCGCGCTCGCTGCGATTGGATCTCCCGCACGACGCGCCATCCAAGATCCAAAGCTGTATTCGGATCTTCGCCGAGCACTTCCGCTGCGGCCGCCAGGAGGACGCGCACGAGTTCCTCCGCTACGTTATCGACGCCTGCCACAACACCTGCCTCCGCCTCAAGAAGCTCCGCCGCAAAGGCGCCGATGTTAATGGCGGCGGTGATGGTGGTGGTACTGTGGTGAAGGAAATTTTCGGTGGCGCCTTGCAGAGCCAGGTGAAGTGTCTGTCTTGTGGATATGAGTCCAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTCCATAGTAACTCGCTTAAAGACTCCATGCAAAAGTTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGTTGTAAGAAATTGGTGACGGCTAAGAAGCAGATGTCGATACTTCAAGCACCTAACATCCTTGTGATACAACTAAAGAGATTTGAGGGCATATTGGGTGGCAAAATTGACAAGGCTGTTGCATTTGAAGAGGTTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCACAACCAGAATATAAGCTCTTTGGTACTATTGTGCATTCAGGCTACTCCCCTGAATCTGGTCACTACTATGCTTATATAAAGGATGCAATGGGTCGGTGGTATTGCTGTGATGATTCTTGTGTGACTGTTGCTACCCTGCAAGAAGTTTTGTCAGAAAAGGTTTACATTCTTTTTTTCTCTCGAACTAACCAAAAGCCAGTATCAAGTAGTAATTCTCTTGCTTCAAATGGTATAAAGTCTCATTCAAATGGGAGCCAAGCAGCTGAATGCCCAAAGGTTGGTGTACCAATGAAAACAGTGTCTGCAAAATCGAATTCTGAGCTATCTCCTTGGAAGGATATGTCAAGTGTATCTAAGAGTCCTAAAGCATCTTCCATGCCTCGAGTGAAGTTTGACATTAATGGAAATTCTACGTTCAAAAGAAATGCTGCTCCTGTAAGTGTGAATGGGAAAGTTGATGTTTCTAGGAATCAGCCTGTAGTAATAAACGGGCATGTGAAAGATTCAGTTTCTTTGGTAAATGGTAAGAAAGATCATTCAACATTACTCAGCAAGAATGGTATTGACAAAAATAAAGTTGATGTAGACAAATTGAAGAGGAAGGAGTCAACATTTGCAAATGGACACACTGATAACCAGAAGGTTGATATTCATTCTGTAAAATCAGATCCCAGGGAAGATACTGATACAAGCAGGGTAATGTCAGGTAGAGGGCCTGCCAATTTTAAACAAGAAATCAATGGCCTCAACAGCAAACCTAAAATATTGGGGAATAAGAGAAAGGTACAGGAGGACCCATGCATTTTACTTGCACATGATGATCAGTCTCAAGCAAGAGTTCAAGATCTGAAGGACATTCTTGGGAAAGAGGCAAAGTCAGTTTTGAGGTCATGTGGCTGGACAGATAATGTCCATGAGTTTATGCGTTCTAGAAAGAAGAAGTTGTTAATAAGGGATGCACAGGGAATTTTCACATCACAGATTCCCGATGATGGTGGTACCCTTACTGGGGATGCTCAGTTTGGCGAAGATGAGGCTGTGCGCGACTTTGTGGATACACGCTATCAA	2199	0.4534	GPTLCLYHPLLLLAVFSSYSLALLQYFSFSQYFWFSLGTQEAARRRIKEKNKRKRRGAAAVTTEEREKQNKTNSEAERYAITVAAAAVRVVESGQCTGSLRRRPPALMALQMTWQPSLLSQKRKTGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLTHQHSSLCDSSASSCPFCILEKQIARSLRLDLPHDAPSKIQSCIRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGADVNGGGDGGGTVVKEIFGGALQSQVKCLSCGYESNKVDEIMDISLDVFHSNSLKDSMQKFFQPEVLDGNNKYKCDSCKKLVTAKKQMSILQAPNILVIQLKRFEGILGGKIDKAVAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGYSPESGHYYAYIKDAMGRWYCCDDSCVTVATLQEVLSEKVYILFFSRTNQKPVSSSNSLASNGIKSHSNGSQAAECPKVGVPMKTVSAKSNSELSPWKDMSSVSKSPKASSMPRVKFDINGNSTFKRNAAPVSVNGKVDVSRNQPVVINGHVKDSVSLVNGKKDHSTLLSKNGIDKNKVDVDKLKRKESTFANGHTDNQKVDIHSVKSDPREDTDTSRVMSGRGPANFKQEINGLNSKPKILGNKRKVQEDPCILLAHDDQSQARVQDLKDILGKEAKSVLRSCGWTDNVHEFMRSRKKKLLIRDAQGIFTSQIPDDGGTLTGDAQFGEDEAVRDFVDTRYQ	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g02003	733	Gene3D	Cysteine proteinases	123	441	-	-
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	591	609	-	-
	Pste3g02003	733	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	130	145	IPR018200	GO:0004843\|GO:0006511
	Pste3g02003	733	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	129	439	IPR028889	-
	Pste3g02003	733	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	74	442	-	-
	Pste3g02003	733	Pfam	Ubiquitin carboxyl-terminal hydrolase	130	436	IPR001394	GO:0004843\|GO:0016579
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	481	506	-	-
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	580	634	-	-
	Pste3g02003	733	FunFam	Ubiquitin carboxyl-terminal hydrolase 25	123	441	-	-
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	47	73	-	-
	Pste3g02003	733	SUPERFAMILY	Cysteine proteinases	122	438	IPR038765	-
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	447	467	-	-
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	56	73	-	-
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	481	500	-	-
	Pste3g02003	733	CDD	Peptidase_C19E	128	437	-	-
	Pste3g02003	733	MobiDBLite	consensus disorder prediction	447	464	-	-
	Pste3g02003	733	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 2.	381	399	IPR018200	GO:0004843\|GO:0006511

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g02003	Pste-Chr3	13678654	13688657	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g02003	128	504	Miscellaneous Gene Families	AT2G24640	35.492	7.08e-63	216

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g02003	3	13678654	13688657	Pste3g02003	3	13678654	13688657	ECH