Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste3g01940 | TAGGAGTTAGGATAACATGAAAAAACGTAGTTGTGGTCGGAACGAAGCTGACGTTGCAGAATTGAAATCCCTAGTTCGAAATTCCTCACTGGTACCTCTCTCTCACTTTCTCTGTTCTCACTCGTTAGTTCTCGTGAGGGATCAATCTTTAGTGTAACATTGCCTTGTATAACCAATCCACAATGTTTCTTCAGTTTTGTTATATGTGCAAAACTTGACTAACTCATTCACCATCAAAATCCATCATTGCCTTCTTCAATCATGGCTTCACTTCTGAATACTGTTTCACCAGCCGCAAATTTACCCCCCAAGACAAAACCACCCAGTTTTGGGAGTTTCTTGCATTCCCAGGTTCCAAATCTTCACACTTTTTCCCTCAACAAGGGTTTTTCTAGGGTTTCAGCTTCGACCCAGATTGCCATTTTCCCAAAAGATTCTGTTTTTAATCTCCCCAATTGGAGGGGTGGGAGGAATGACCAAAGGGGTAAAGAGGTGAGGATATATGATGCATTTCTCCATTTAGAGTATTTGGTGGGTAAGGGCCAAAAGCCTGAGGTAACTCAAGCAACTCAGCTTTTGTATGATCTTTGCAAATTTAACAAAGCTAGAAAGGCTGTTAAGGTGATGGAGATGATGATTAGTTCAGGTATTATACCTGATGCCGCTTCTTACACATACTTGGTCAATTTTCTGTGTAAGAGAGGCAATGTTGGGTATGCACTTCAGTTGGTTGAGAAAATGGAGGGGCATGGGTTTCCAGCTAACACTGTTACCTATAACAGTCTTGTTAAAGGGCTTTGCATGTATGGGAACTTGAACCAGAGCTTGCAGCTTTTGGATAAGTTGACAAAGAAGGGCCTTGTCCCGAATGCGTTCACTTATTCTTTCCTGCTTGAAGCAGCGTATAAGGAAAGGGGAGTGGATGAGGCCAGGAAGCTTCTTGATGATATAATTGCCAAGGGTGGGGAGCCTAATTTGGTTAGTTACAATGTGTTGTTAACTGGGTTGTGCAAGGAAGGAAGAACTGAAGAAGCAATTAAGCTTTTTAGGGAATTGCCTTCGAAAGGATTTAGTCCTAGTGTTGTGAGTTACAACATTTTGCTGAGGAGTCTGTGCTATGAAGGGTGGTGGGAGGAAGCTAACGAGCTTCTGGCCGAAATGGATAAAGAGGGCCAGTCTCCTTCAGTGGTTACTTACAACATATTGATTACTTCACTTTCCCTCCACGGAAGAACAGAACAAGCTTTCAAGGTTTTAGATGAAATGACAAGGAGCGGGTTCAAAGCGAGTGCTACTAGCTATAATCCGATCATTGCCCGACTCTGCAAGGAAGGGAAGGTGGATCTTGTTTTCCAGTGTCTAGACCAAATGATTCACCGGCGCTGTAATCCTAATGAAGGAACGTACAGTGCTATTGCAATGCTGTGTGAGCAAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTTAAGATATTCACGATTTTGGAAGAAAATGACCACATGCCTGATATTGACAACTACAATGCACTTATACTTGGATTTTGCAAAGCTCAGAGAACAGACTTGTCAATAGAGATATTTCTCTATTGGATGGTTAACAAAGGATGTGTTCCTAATGAGACAACCTATACCATTCTTGTGGAAGGGATTGCTTTTGAAGATGAGAGAGAGATAGCAGCCGACCTATTGAAAGAGTTATATGTGAAAGAGCTTCTGAGCCAAAGTACTGTTGAAAGACTCTGTATGCAATACGATCTCAAGGAATCAATAGCTACAGGGTAGTGACATAGACTCCCAAAGTATATAACAGAAAGTAAGTAGGTACATGACTGCCTTCACATATGAATGAAATTTTCTCAGCTTGATTTCCTTTTAGATTGTTGATTACTCCCCGGTAAACAAAAGGTTCCCAAATGCTTGGAATTTTGGTTATTTTAGAGATGAATAATGAAAAGGTTCAAGCAGATATCTAATGCTGACTGCATTTTCTCCCATGAGTTGTGTAAATGATTTTTATTATCCATTTGTCAATTTGTT | 2040 | 0.4103 | MASLLNTVSPAANLPPKTKPPSFGSFLHSQVPNLHTFSLNKGFSRVSASTQIAIFPKDSVFNLPNWRGGRNDQRGKEVRIYDAFLHLEYLVGKGQKPEVTQATQLLYDLCKFNKARKAVKVMEMMISSGIIPDAASYTYLVNFLCKRGNVGYALQLVEKMEGHGFPANTVTYNSLVKGLCMYGNLNQSLQLLDKLTKKGLVPNAFTYSFLLEAAYKERGVDEARKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFRELPSKGFSPSVVSYNILLRSLCYEGWWEEANELLAEMDKEGQSPSVVTYNILITSLSLHGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVFQCLDQMIHRRCNPNEGTYSAIAMLCEQGMCREGMLDEALKIFTILEENDHMPDIDNYNALILGFCKAQRTDLSIEIFLYWMVNKGCVPNETTYTILVEGIAFEDEREIAADLLKELYVKELLSQSTVERLCMQYDLKESIATG | 507 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 203 | 237 | IPR002885 | - | |
| Pste3g01940 | 507 | Gene3D | Tetratricopeptide repeat domain | 302 | 368 | IPR011990 | GO:0005515 | |
| Pste3g01940 | 507 | Gene3D | Tetratricopeptide repeat domain | 160 | 232 | IPR011990 | GO:0005515 | |
| Pste3g01940 | 507 | Gene3D | Tetratricopeptide repeat domain | 68 | 159 | IPR011990 | GO:0005515 | |
| Pste3g01940 | 507 | Gene3D | Tetratricopeptide repeat domain | 233 | 301 | IPR011990 | GO:0005515 | |
| Pste3g01940 | 507 | Pfam | PPR repeat | 129 | 161 | IPR002885 | - | |
| Pste3g01940 | 507 | Pfam | PPR repeat | 392 | 411 | IPR002885 | - | |
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 273 | 307 | IPR002885 | - | |
| Pste3g01940 | 507 | Gene3D | Tetratricopeptide repeat domain | 369 | 503 | IPR011990 | GO:0005515 | |
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 308 | 342 | IPR002885 | - | |
| Pste3g01940 | 507 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 79 | 335 | - | - | |
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 168 | 202 | IPR002885 | - | |
| Pste3g01940 | 507 | NCBIfam | pentatricopeptide repeat | 170 | 204 | IPR002885 | - | |
| Pste3g01940 | 507 | NCBIfam | pentatricopeptide repeat | 136 | 168 | IPR002885 | - | |
| Pste3g01940 | 507 | NCBIfam | pentatricopeptide repeat | 240 | 274 | IPR002885 | - | |
| Pste3g01940 | 507 | NCBIfam | pentatricopeptide repeat | 310 | 343 | IPR002885 | - | |
| Pste3g01940 | 507 | NCBIfam | pentatricopeptide repeat | 275 | 308 | IPR002885 | - | |
| Pste3g01940 | 507 | NCBIfam | pentatricopeptide repeat | 421 | 454 | IPR002885 | - | |
| Pste3g01940 | 507 | NCBIfam | pentatricopeptide repeat | 346 | 379 | IPR002885 | - | |
| Pste3g01940 | 507 | SUPERFAMILY | HCP-like | 83 | 277 | - | - | |
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 343 | 377 | IPR002885 | - | |
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 417 | 452 | IPR002885 | - | |
| Pste3g01940 | 507 | Pfam | PPR repeat family | 416 | 463 | IPR002885 | - | |
| Pste3g01940 | 507 | Pfam | PPR repeat family | 307 | 348 | IPR002885 | - | |
| Pste3g01940 | 507 | Pfam | PPR repeat family | 168 | 213 | IPR002885 | - | |
| Pste3g01940 | 507 | Pfam | PPR repeat family | 237 | 285 | IPR002885 | - | |
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 133 | 167 | IPR002885 | - | |
| Pste3g01940 | 507 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 238 | 272 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste3g01940 | 125 | 503 | Miscellaneous Gene Families | AT4G11690 | 27.366 | 7.28e-48 | 172 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste3g01940 | 3 | 13193354 | 13195588 | Pste3g01940 | 3 | 13193354 | 13195588 | ECH |