Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01930 CTCAGCCCACCCGTTACCGTTTTTCTTTTTTATCTTGGATTCCCTTCGCATTTCCTTTCTCACCTTAGCTTTGTTGCAGGAGAGACTGAGCTAGGGTTTATCGAGGGTTTCGTTCATTCCTCTCTGCAACAATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCACAGGTTCCGGTTCCGGCTCCTCCTCCCGCTCCTCTTCCCCCTCCGATTCTCGCTCCTCCTCTCGCTCCGCTCCCGTTCCCGTTCCGTCTCTCGCTCTCCCTCGCGCTCCAGATCTGGCTCTTCCTCTTCCTCCTCTCCCTCCCGCAGCCGCAGTCCTCCGCCGCAGAGGCGCAGAAGTATTGAATTTTGAGTGCGGCTTGTTTCTGAGAGATGTGGAAATTGAGTCTTTCGGAGTCTTGCGGAAATTCTTGGTTGATATGATACTCTTTTTTTCACTTTCTTTTTTCTGTAGTCCTGCTGAAGCAGCTAGACGAGGTCGCTCTCCTCCACCAAAGAGAGCTTCTCCGCCCCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCGATGGATCGAACTGTCAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGGCAAGAGGAGATGCTGAAAAAGCATTATTGTATATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACACTACCTCCAAGGCAGAAAGTTTCACCACCCCCAAAGACTTCTGCTGTTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTAATGCAGATGTTGACAAGGATGGGCCAAAGCGTCCAAGAGAATCTCCTCGTAGAAAACCTCCTCCCTCACCTCGGAGGAGATCTCCCGTACCTCGAAGACCTGGATCTCCAAGACGACCAGATTCTCCTCGCCGTCGCGCAGATTCTCCTGTACGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGTGACACACCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACTGAGACGCCCTAGATCCCCTGCAAGGATCTCACCTAGAAGGATGCGTGGAAGTCCAGGTCGGAGACGTTCACCTCCTCCTCCTCCTCGACGCCGATCTCCACCTAGGCGACCTCGAAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGTACTCGCTCTCCAATACGTAGGTCTGCACGCTCACGCTCAAGGTCATTCTCACCTCGCAGAGGTAGACCACCAGTTAGACGTGGTAGGTCATCATCCTACTCTGATTCGCCAAGCCCGCGAAAGGTATCCCGGAGATCAAAGAGTCGTAGCCCTAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGCAGTAGCAGCAGTTCACCACCACCTCCTCGCAAACCATAGATAATTCTTTGTACATCTAGTGTCTCTTTCTGTTGATGTATTTATCGAGATTCTGTACCAGCTGAATTCTAACTTGATATGCTTGCGGATATATGTTGCTTTTCATTGTTGTCCATTAACACATTTTTTCTTATTGGCACTTGTTTTTGAAACTAGACATTCCGT 1652 0.5012 MAKPGRGRRSPTGSGSGSSSRSSSPSDSRSSSRSAPVPVPSLALPRAPDLALPLPPLPPAAAVLRRRGAEVLNFECGLFLRDVEIESFGVLRKFLVDMILFFSLSFFCSPAEAARRGRSPPPKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKARGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKTSAVAPKRDTPRTDNANADVDKDGPKRPRESPRRKPPPSPRRRSPVPRRPGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPLRRPRSPARISPRRMRGSPGRRRSPPPPPRRRSPPRRPRSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPRKP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01930 451 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 110 304 - -
Pste3g01930 451 SMART rrm1_1 140 213 IPR000504 GO:0003723
Pste3g01930 451 MobiDBLite consensus disorder prediction 113 136 - -
Pste3g01930 451 MobiDBLite consensus disorder prediction 280 310 - -
Pste3g01930 451 MobiDBLite consensus disorder prediction 216 451 - -
Pste3g01930 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 211 IPR000504 GO:0003723
Pste3g01930 451 SUPERFAMILY RNA-binding domain, RBD 125 225 IPR035979 GO:0003676
Pste3g01930 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Pste3g01930 451 MobiDBLite consensus disorder prediction 239 264 - -
Pste3g01930 451 MobiDBLite consensus disorder prediction 332 402 - -
Pste3g01930 451 CDD RRM_RNPS1 141 213 IPR034201 -
Pste3g01930 451 MobiDBLite consensus disorder prediction 11 37 - -
Pste3g01930 451 FunFam Serine/arginine-rich splicing factor SR45 104 224 - -
Pste3g01930 451 Gene3D - 109 223 IPR012677 -
Pste3g01930 451 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01930 Pste-Chr3 13089879 13095009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01930 141 214 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.97e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01930 3 13089879 13095009 Pste3g01930 3 13089879 13095009 ECH