Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00796 TGGTTTGTTTTTTCTCGAGAAAATTCTCTCTCCTCTCTCTCTCTATCTGGTTTGAATTCTTCTTCCACTCGCAGACGCGCACTCGTGTCTTCTTCTTCTTTCTTATTTATTGCACTTGTCATATCATATACACGCTCTCACCCACCAAATTTTTCATCATTTCACCCTCACCCAACCCTTCCTCTCAGTTCTGCCTTTCTTTTTTTTTTTCCTCTAATGGCTTTTTGATCATACCATCATTTCAGGGGTGCTGCTGGGTGGTTCTACAAGCATGGCATCTAGTCATCCATTCTTTGATGATATTCGGAGCAGATCTAGTGTTGATCCTCCACAAACTGACGAGCCAACCGAAATTGGTGAGCATGTGAATGAGCCTCCGCAGACAGCTCCTAAACCTCATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGTTTGAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGACCGGTGTCCTACTTGTAGGCACGAGCTTGGCAATATCAGATGTCTAGCACTGGAGAAGGTGGCTGCATCGTTAGAACTTCCCTGTAAATATCAAAGTTTTGGGTGCATTGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGTGTTTAGACCTTATAACTGCCCATATGCTGGTTCAGAATGTTCTGTTATGGGTGATATACCTTACTTGGTGGCCCATCTAAAAGATGATCATAAGGTGGACATGCACAACGGTTGTACTTTTAATCATCGCTATGTCAAAACAAATCCTCAAGAAATTTTTTGTGCAAAATGTGACTTAGGGTCCTTAGCTGATTTCTGGAGCTCACTTTTGTCCATAGGTTTTCAGTTGCTTTGGTCACTAGGGATGGCTCCTGTCTACATAGCATTTCTGCGGTTTATGGGGGACGACAATGAGGCAAAGAACTATACCTACAGTCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATTTGGCAGGGGGTGCCTAGAAGCATTAGGGATAGCCACCGCAAGGTTCGCGACAGTTTTGATGGTCTCATCATTCAGAGGAGCATGGCACTATTCTTTTCCGGCGGTGACCGGAAAGAATTGAAACTACGAGTCACCGGAAGAATTTGGAAAGAA 1186 0.4418 MASSHPFFDDIRSRSSVDPPQTDEPTEIGEHVNEPPQTAPKPHGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQSFGCIGIYPYYSKLKHESQCVFRPYNCPYAGSECSVMGDIPYLVAHLKDDHKVDMHNGCTFNHRYVKTNPQEIFCAKCDLGSLADFWSSLLSIGFQLLWSLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKLIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDRKELKLRVTGRIWKE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00796 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 299 - -
Pste3g00796 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 305 - -
Pste3g00796 305 SUPERFAMILY TRAF domain-like 109 303 - -
Pste3g00796 305 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Pste3g00796 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Pste3g00796 305 CDD RING-HC_SIAHs 54 92 - -
Pste3g00796 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Pste3g00796 305 MobiDBLite consensus disorder prediction 1 45 - -
Pste3g00796 305 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Pste3g00796 305 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Pste3g00796 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Pste3g00796 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 212 299 IPR008974 GO:0005515
Pste3g00796 305 Pfam Seven in absentia protein family 98 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pste3g00796 305 SUPERFAMILY RING/U-box 48 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00796 Pste-Chr3 4919181 4924010 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00796 3 4919181 4924010 Pste3g00796 3 4919181 4924010 ECH
Pste3g00796 3 4919181 4924010 Pste1g04340 1 28814065 28818397 PCT