Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00322 CAACAGAGAAGATTCGGAATGAGAGTGTGGGGAGAGATGTTGTGTCTTGTGTTGGGATTAGTATTAGTGACGAGGAGCGTAGTTGAAGCAAAGTGGAGCATTGAAGCATGCAATTCATCAGAATCAGAGGCCTGCCCCTCTCTGCTCTCTTATATATTGCCTTGGGACTCGAAAGTGTCGGAAATAGCGACGCGGTTCGGAGTAAACGTTAATGATATATTGGCCTCAAACGCTGTGTTCCCGATAACAGCATGGAGTGGACAGAAAATCTTGAGGAAGCAATCAGAAGTGAGAATACCCATATCATGTTGTTGCGTGGACGGGATCCGAAGGTCAGTGTCGACAATATACACGGTTAGCGCAGCCGACACCTTTGCCTCCATATCAGAAGGCTACGGTGGTCTCGTGACTGCCCAACAAATCAAGATCCTTAACGGCATCGATGCCTTGACATATGGTGCCACCATTCTTATTCCACTGCCTTGCACGTGTTTTAACAATCTTAATAATGCTGCAACTGCTATTTATATCACGTATGTCGTCCAGAGAAGGGACACCCTGGAGAGCATAGCAACTAAGTTTGGCACCACTCTCTCCGACTTGCAAACAGTAAATGGCTTTGGGGAACCCACGGTCCATCCCGGAGACATTCTATCTGTTCCCCTCCCAGCATGTTCATCAGCAGCCTTCAATTGGTACCATGACGCTATCATACTCCCAAATGCCTCATATACATTAACAGCCGCCAACTGCATCAAATGCACCTGTCAGCCAACCGATTTCACCTTGCAATGTGTTCCTTCTGGACTAGATGTCCCCTGCTATAATTTACGTTGCAAAGGATCCCATCTTATTATTGGTGACCAATGTGTGGACCATTCAGAAACAGCTTGCAATGTCACCCAATGTGTATACCGTGGCCATAGGGGTGGCAAAATTCTGAGTAGTGTGAAGAATTCTTCTTACCTCCGGTGCCCGGATAATCTGTATCATAGTGGAGCATCATGTTCACCATATCCAGAGGACCTATTTGGTATGTCTCCAAGGTCAAGCCCCTTGCCACTGCCAGTTTCAAAGGCTTCTCCGAGCACTCTTGCCTCCAGTGGAAGGCTTGATCAATTTTTAATCCTTGTGCTGCAATTATTCTTCTTAAAACTTATCCTTCGTTTTCTGATTTAATAAGCGTAGCTAGTTGAGAGCAACCCATATCTTGTATCCAATTCTACCTTAAGCCTTCCTCCCTACAGGAAAATAATAATTTCACTTTGGTGTACAATTTTTTTTTTCCGCGTGTTTCATCTTTTGTGTCTACTGTAAACTTTGTTGCTTTGGATGTTTAGTTTGTCGCTATTTAATTACACAGTTGTCTATTACTATTTTGTAGTAATTCATACTCTTAATTTGGAA 1407 0.4399 QQRRFGMRVWGEMLCLVLGLVLVTRSVVEAKWSIEACNSSESEACPSLLSYILPWDSKVSEIATRFGVNVNDILASNAVFPITAWSGQKILRKQSEVRIPISCCCVDGIRRSVSTIYTVSAADTFASISEGYGGLVTAQQIKILNGIDALTYGATILIPLPCTCFNNLNNAATAIYITYVVQRRDTLESIATKFGTTLSDLQTVNGFGEPTVHPGDILSVPLPACSSAAFNWYHDAIILPNASYTLTAANCIKCTCQPTDFTLQCVPSGLDVPCYNLRCKGSHLIIGDQCVDHSETACNVTQCVYRGHRGGKILSSVKNSSYLRCPDNLYHSGASCSPYPEDLFGMSPRSSPLPLPVSKASPSTLASSGRLDQFLILVLQLFFLKLILRFLI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00322 392 Gene3D LysM domain 169 231 IPR036779 -
Pste3g00322 392 Gene3D LysM domain 110 168 IPR036779 -
Pste3g00322 392 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Pste3g00322 392 Pfam LysM domain 117 159 IPR018392 -
Pste3g00322 392 Pfam LysM domain 179 221 IPR018392 -
Pste3g00322 392 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 327 - -
Pste3g00322 392 CDD LysM 177 220 IPR018392 -
Pste3g00322 392 CDD LysM 115 158 IPR018392 -
Pste3g00322 392 SUPERFAMILY LysM domain 176 222 IPR036779 -
Pste3g00322 392 SMART LysM_2 178 221 IPR018392 -
Pste3g00322 392 SMART LysM_2 116 159 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00322 Pste-Chr3 1574225 1576130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00322 30 326 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 42.384 1.77e-73 233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00322 3 1574225 1576130 Pste3g00322 3 1574225 1576130 ECH