Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00305 ATGTCAGAGGTTAAAGATCCAATGAAAAAGCAATTTGGAAGTATAATTTCATTGTCACATGCAAATGATTCTTCTTCTGCACTTGCACATCTCACGTGTCCTCCATCTTCCTCTTCTTGTTTTCATGAAACTACCTCTACAACACAGCTACAAGAATCTAAGGAGCCATCAAGGAATGGAGTTACCTTAGTGCAAGATAATGATGTCTCTGATCAAACCACAGGGGATTTAAAACCTCCCCTTACGTCTTCAAGTAGATGCCAGAATCCTAAGACACCTTCAACAAAAATCGAGACAATGACATTGAAATCCTTCAGAAATGGAGCACAAAGTAAGACAAGTACCTCTGAAGAAAAAAAACCAAAGCAACCTGAAGAGGCTCTTCCATGTCCAAGATGTAATAGCATGCTCACCAAATTTTGTTACTACAACAACTACAATACCAAGCAGCCTCGTTATTTATGCAAGAATTGCCAAAGATATTGGACTGATGGTGGAACTATAAGGAACAACATGCCAATAGGTGCTGGTCTTAGAAAAAGCAAGAACCCTTTGGCAACCAAATCACATGGCCAACAACACAAAATGGTCCCAGAGGAACTCCAAGGAGGTAGACTTAATGCCCCCAAAAAATTGCATAACACTATTATGGGAAATGGAGTGGCTATACCAAGCTTTGGTCTTGATTCTACTCTTCATGATACAATGCCATCTGTGATGAACATTGCTGATAGAGCACAAAGTGGTGTTCCAAATGGGTTTCGTGCAACAATGCCAAATCATTATGAAAAGGAGGATTGGATTAGTCATTGTTCTAAAGTTCCTTTCACATCAACTTCAACTTCAACTTCAAGACATGTTGGCTCACATGAATCCGTGGATAAAAGAGTTAATGACTTCAATTCTCAATTTCCAGATTATCCAAGTTTCCCTTGGTCCTATTCCATGCCTCTTACATATCATCCACCAAGGCACCCTTTATCATTCCATTCTACACCATCATATTGGAGTTACATGCCACCACCCTATTGGAATATGCCCTGTATCCCATCTCAATCATCTTTCAACAACAATGTCTCTACTTCTACTTTGGGGAAACACTCAAGAGATGGGAACATCATTGCCCCACCAAATTCACAAAAAGAAATGCATGATATAAATCACAAAGGTTCAACACACAATGTCTTGATCCCTAAGACTCGTAGATTTCATGACCTTAGTGAAGCTGCAAAAAGTTCTATATGGTTACAATTAGGGATTAAGAATAATAAGGCCAATTCTGAAGGCCTTTTCACTGCTTCTTCATCCAATGGAAATTACATGAATCACATGCTTCAAGATAACCCTGCAGATTAA 1356 0.3909 MSEVKDPMKKQFGSIISLSHANDSSSALAHLTCPPSSSSCFHETTSTTQLQESKEPSRNGVTLVQDNDVSDQTTGDLKPPLTSSSRCQNPKTPSTKIETMTLKSFRNGAQSKTSTSEEKKPKQPEEALPCPRCNSMLTKFCYYNNYNTKQPRYLCKNCQRYWTDGGTIRNNMPIGAGLRKSKNPLATKSHGQQHKMVPEELQGGRLNAPKKLHNTIMGNGVAIPSFGLDSTLHDTMPSVMNIADRAQSGVPNGFRATMPNHYEKEDWISHCSKVPFTSTSTSTSRHVGSHESVDKRVNDFNSQFPDYPSFPWSYSMPLTYHPPRHPLSFHSTPSYWSYMPPPYWNMPCIPSQSSFNNNVSTSTLGKHSRDGNIIAPPNSQKEMHDINHKGSTHNVLIPKTRRFHDLSEAAKSSIWLQLGIKNNKANSEGLFTASSSNGNYMNHMLQDNPAD 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00305 451 MobiDBLite consensus disorder prediction 24 127 - -
Pste3g00305 451 MobiDBLite consensus disorder prediction 24 112 - -
Pste3g00305 451 PANTHER CYCLIC DOF FACTOR 2 2 450 IPR045174 GO:0003700|GO:0006355
Pste3g00305 451 Pfam Dof domain, zinc finger 126 183 IPR003851 GO:0003677|GO:0006355
Pste3g00305 451 ProSiteProfiles Zinc finger Dof-type profile. 128 183 IPR003851 GO:0003677|GO:0006355
Pste3g00305 451 ProSitePatterns Zinc finger Dof-type signature. 130 166 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00305 Pste-Chr3 1505580 1508451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00305 98 450 C2C2-Dof Transcription Factor Family AT5G39660 36.104 1.60e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste3g00305 zf-Dof 1.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00305 3 1505580 1508451 Pste3g00305 3 1505580 1508451 ECH
Pste3g00305 3 1505580 1508451 Pste6g02582 6 13201807 13210332 ECH
Pste3g00305 3 1505580 1508451 Pste2g00596 2 5720535 5723864 ECH