Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01139 ATGGCTCTGGAAGCTCTTCAATCACCCACCACAGCCACTCCATCTTTTGTCGGTCCTTTTGAAGAAGCAAATCTCAGTTACTTGGAGAAATCATGGGCCAAAGGAAAGCGTTCTAAGCGAGGCCGCATGGACCAACAAATGCAACACCCTTCGTGCACCGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCCCGGGGTGGCGCCGCCGCACCCGTCCCCACCACCACCAAGCCCACCGTCAAACTCACCTACAAATGCTCTGTCTGCAACAAAGCCTTCTCCTCTTACCAAGCACTGGGCGGACACAAGGCCAGCCACAGGAAATTCGTGGGCGAAGACCACTCCGCCTCCTCCGCCGTGACAACCAGCTCAGCGTCCAACGGAGGCGGTAAGACCCACAAGTGCTCCATATGCCACAAGACGTTCCCCACAGGACAGGCCTTGGGCGGACACAAACGTTGTCACTACGAAGGCGGCGGTAACAGCAACAGCGCCGTAACTGCCTCTGACGGCGTGGGGTCCACTCACACCGGAAGCCACCGCGATTTCGATCTCAACCTCCCTGCTTTTCCTGACTTTTCAACAAGGTTCTTCGCCGACGACGAGGTTTCCAGCCCTCATCCATCCAAGAAGCCCCGTCTCCATTTGACCATACCCAAGACTGAAATTCCTCACCACTGA 687 0.5648 MALEALQSPTTATPSFVGPFEEANLSYLEKSWAKGKRSKRGRMDQQMQHPSCTEEEYLALCLIMLARGGAAAPVPTTTKPTVKLTYKCSVCNKAFSSYQALGGHKASHRKFVGEDHSASSAVTTSSASNGGGKTHKCSICHKTFPTGQALGGHKRCHYEGGGNSNSAVTASDGVGSTHTGSHRDFDLNLPAFPDFSTRFFADDEVSSPHPSKKPRLHLTIPKTEIPHH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01139 228 Gene3D Classic Zinc Finger 84 157 - -
Pste2g01139 228 MobiDBLite consensus disorder prediction 205 228 - -
Pste2g01139 228 SMART c2h2final6 135 157 IPR013087 -
Pste2g01139 228 SMART c2h2final6 86 108 IPR013087 -
Pste2g01139 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 157 IPR013087 -
Pste2g01139 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Pste2g01139 228 SUPERFAMILY beta-beta-alpha zinc fingers 85 157 IPR036236 -
Pste2g01139 228 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 191 IPR044653 GO:0003700
Pste2g01139 228 MobiDBLite consensus disorder prediction 203 228 - -
Pste2g01139 228 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pste2g01139 228 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Pste2g01139 228 Pfam C2H2-type zinc finger 135 158 - -
Pste2g01139 228 Pfam C2H2-type zinc finger 86 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01139 Pste-Chr2 12397351 12398037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01139 1 220 C2H2 Transcription Factor Family AT1G27730 55.411 1.80e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste2g01139 zf-C2H2_6 5.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01139 2 12397351 12398037 Pste2g01139 2 12397351 12398037 ECH
Pste8g00823 8 4249681 4250346 Pste2g01139 2 12397351 12398037 PCT