Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00982 CATAATCCTCTTAGACCCTTTACGGCCACCTCTCTCAAAATCCAGATTCAACCCTTCTTTCTCTCTCACAAGCCTAACCTCGGAACTTCCTTTCCCTAGTTCGTATCTAACTTTATCAGCAAGAAAAAGAAAAACCAGAGAGAGACGGTAATTGTGAAAGAAGATGCAACCATCATCCAACGGCTCTGATTCGCAAGCGGCGGAGGCCAAGCAGAACCAGCAGCAGAGAACCCCGCCACCACAGGCAGTGGCGGTGCCGCCTCAGTGGATGCCGATGCAGTACCCGGCGGCCGCCATGGTAATGCAGCACCACATGATGGCGCCTCAACATTACGCCGCCCCGCCCCAGCCCTACATGGCGTACCACCAGTACCAGCAGCAGCTTTCGCACGTGCCGCTCGCCCACCATCAAGGATCCAGCGCCGAGAACAAGACCATTTGGGTTGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCGCCGGCGAGATTTCCTCCATTAAGGTTATACGCAATAAGCAGACGGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGTACAGTTGAGAAAGTTTTGCAGAATTATGCAGGGATACTGATGCCTAACACAGAGCAACCTTTCCGCTTGAATTGGGCAACATTTAGCACGGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTACAGATGTTACTGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGTTTCGTCAGATTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACATCTAGCTATCAGCAAGGAAGTCAGGCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTAACAGCTGAAGATCTTAAGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAAGCGTTGCAGAAGCTAAATGGGTCAACGATTGGCAAGCAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGCAGTTTAGAGGAGAAATGGGAAATCAGTGGAGTGGAGCGTATTACGGGGGAGCTGGAGCTGGAGCTGGAGCAGTTTATGATGGTTATGGATATGCTTTGGCAGCACCTCATGACCCCAGCTTATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAACAGCAAGTAAGCTAGCTGAGTCCCTTGTAATCTGCTTCCATCCCTCCTAATTCTGGAGTGGGGTTGAATTTTTATAACCTCAGCTAGGAATTCAATTAATCATTCGTTTAGGATTAAACTTGTTTGTTGCAATAATTAAGTATGCTCTCTTGGCTCTTGCTTGCTTTTAAAGCTTGTGCATGTCTTTTCTCTTCATTTCCTTTGCTTTAGCTCAAACTGCTTCAGAGAAAGCTATCTGGCACCACAGAATTTAAGAGCCATGCCTGGGTCATGGTGATCGTGGACTTAGGTTGAATGGTTGAATCGATCATTTGATCTCAGTAATTTAACTTGCTCGAGGTTTGGGGCTTGTTGGTTGACG 1787 0.4572 MQPSSNGSDSQAAEAKQNQQQRTPPPQAVAVPPQWMPMQYPAAAMVMQHHMMAPQHYAAPPQPYMAYHQYQQQLSHVPLAHHQGSSAENKTIWVGDLHHWMDENYLHRCFASAGEISSIKVIRNKQTGLSEGYGFVEFYSHGTVEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLATDVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSSYQQGSQANGTSSQSEADSTNTTIFVGGLDPNVTAEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGSTIGKQMVRLSWGRNPANKQQFRGEMGNQWSGAYYGGAGAGAGAVYDGYGYALAAPHDPSLYAAAYGAYPIYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00982 425 SUPERFAMILY RNA-binding domain, RBD 51 173 IPR035979 GO:0003676
Pste2g00982 425 FunFam Polyadenylate-binding protein RBP47B 89 169 - -
Pste2g00982 425 SMART rrm1_1 184 258 IPR000504 GO:0003723
Pste2g00982 425 SMART rrm1_1 91 166 IPR000504 GO:0003723
Pste2g00982 425 SMART rrm1_1 289 356 IPR000504 GO:0003723
Pste2g00982 425 MobiDBLite consensus disorder prediction 1 32 - -
Pste2g00982 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 364 - -
Pste2g00982 425 Gene3D - 182 258 IPR012677 -
Pste2g00982 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Pste2g00982 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 351 IPR000504 GO:0003723
Pste2g00982 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 159 IPR000504 GO:0003723
Pste2g00982 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Pste2g00982 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Pste2g00982 425 FunFam Polyadenylate-binding protein RBP47 272 397 - -
Pste2g00982 425 Gene3D - 89 169 IPR012677 -
Pste2g00982 425 SUPERFAMILY RNA-binding domain, RBD 182 359 IPR035979 GO:0003676
Pste2g00982 425 MobiDBLite consensus disorder prediction 262 284 - -
Pste2g00982 425 Gene3D - 264 395 IPR012677 -
Pste2g00982 425 CDD RRM3_NGR1_NAM8_like 287 358 - -
Pste2g00982 425 FunFam Polyadenylate-binding protein RBP47C isoform A 182 258 - -
Pste2g00982 425 MobiDBLite consensus disorder prediction 260 284 - -
Pste2g00982 425 MobiDBLite consensus disorder prediction 1 25 - -
Pste2g00982 425 CDD RRM2_SECp43_like 182 261 - -
Pste2g00982 425 CDD RRM1_SECp43_like 91 171 - -
Pste2g00982 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00982 Pste-Chr2 10417885 10423330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00982 184 367 Eukaryotic Initiation Factors Gene Family AT4G34110 32.308 8.60e-20 90.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00982 2 10417885 10423330 Pste2g00982 2 10417885 10423330 ECH
Pste8g01075 8 5617659 5622703 Pste2g00982 2 10417885 10423330 PCT