Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00596 ATGAGGTTGGACAAGATTATCAACAAAGCGACGAATGAGCGCGTGCCACGCAAATGGGGTACCTTCGATGAAGTCAAGAGAGCTGACGTGGCAACGAGTGGGGTGCACAGAAAGAGTGTGCAACGCAGAGAATCAAACACTCCAAAAGAAAATCTAATGCAAGCCACAAAAACTTGTGGCCAAGAATCGAAACCCCTCGGTGACGTGGCACAGAGCTCTCGTTTAAACGGATCAAAATCCAACTCCTCGTGCCTCCATTGCCAACTTAGATCAAAACCCAAACCTCAAAAAAACCGAAACTCACACACACTTCGAAACAAAACATCATCTGCACCAGCAGTAACCAACCAACGTTCACGCCGCAACTACAACGTAACCGTTTCTCTCCTACGTTGTCGTTTCGCTCTTCGGAAAATGCAGGAAAATAAGGACCCTGCGATTAAGCTCTTCGGTCAGAAGATTCCCTTCCCCGGAGAACCTGATGCTCCACCCATTGCCGCCGCCGCAGAATCTGCCTCGCCGCCGCCCTCAGAGCAAGAGGACTTTGCTGACTCAGAGGCTGAAGATGACAAAGATAAGGATCCACGAGCTGAAAAAGTTAGTGAGAAAACGAAAGAAGCTGATACTCCTCCAAATGCTGCAGACTCTAAGAAGATCCCAGTGGGTGTTCAGAATCCAAATGCTGAAGAAGAATCTGCAAAGTCAAAAACTGGCAAGTCAGAGAATGATCAAACTGATACAACCACTACCACAGCCACCAACTCGCAAGAGAACAACAAAACACTGAAAAAACCAGACAAAATTCTCCCATGTCCACGATGCAACAGCATGGATACCAAGTTTTGTTACTACAACAATTACAACGTTAACCAGCCACGTTATTTCTGCAAAGCGTGTCAAAGATACTGGACTGCTGGTGGCACTATGAGGAATGTTCCAGTTGGTGCAGGGAGAAGAAAGAACAAACACTCAGCTTCTCACTACCGCCACATCACAATCTCTGAGGCTCTTCAAGCTGCAAGAATTGATGCCCCAAATGGGACTCATCCTCATCTTTTGAAAACCAATGGTAGAGTCCTCAGCTTTGGGATAGACCCTCCAATTTGTGATTCCATGGCCTCAGTCCTTAACCTTGCAGAGAAAAAGGGTCTTAATAACAACACAAGAAACGGGTTTCACACCGTTGAGGATCAAAAGAACAAAGATAGCAACGGTGATGATTGCTCAAGTGTGTCTTCCATAACAGTTTCCAATGAGGAAAGTGGGAAAAGCACGTCCCAAGAGTCGTTGGTGCCAACCAACAACGGTTTCATTCACCATGTTCCTTGCATTTCAACTGTTCCTTGGCCTTATCCTTGGAACACTGCAGTTCACTCAGCACCTGCTTTGTGCCCTCCAGGGTTTCCCATGTCATTCTACCCTGCTGCAGCATTTTGGAACATTCCATGGTTCCCCTCACACTCACACCATTCTGCTCCAAGGTCTCCAAGTTCTGGTCCAAATTCTCCAACACTAGGGAAACACTCCAGGGACGAGGATGTGGCAAAACAAAACCATTTGAATGAGGAACCGTCCAGGCAGAGAAACGGGTCAGTTTTAGTCCCCAAAACATTGAGAATTGATGACCCAAGTGAGGCAGCAAAAAGTTCTATATGGGCAACTTTAGGGATCAAGAATGAGTGCGTAAGTGGGGGTGGCATGTTCAAGGGATTCCAATCAAAGAAAGATGAGAAAGACCATGTTGTTGAAGCCTCTCCAGTTTTGAGGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGAATTAGCAATAGCAACAAAACCCTTTTGTGAGTAAGAGACGGTGACCATCTTTCAGCAATGGGTGTTTTGGTTAGCCTCATTGAGTTTGGAATGAAGTGAAGGTTGGTAGTCTCGGATTTCCTCAGCATAGGTAGGGGGAACTAATATACTAGGAGGCTTTAGTCGCTGGTGGGAAGTGGGAACTAATTTTTGTCTTTCATGTCACACTATATTTTTTGTTTTTGCCTTTTATGTGCTTAGTTCGGTGAGTTTGAGTTGGTGTACATATATAAATATATGTGAAAATACTGGCCAAAGATGGAAAAAAGGTCTTTACCATGTATAAAAATTCAGAGGTACTGTATTTTCTTATGAAAATGGAAAATGAGACTTCCTTTGTTTGGCATATTTGGTTCTTTGTGGAAAAATCTGTGCATTTGTGGATAGTTCTCTACCTCTCTGAATCTGAATGAACATCACAGAGGTATCTGCTTTTTCAAAAGATGAGGGAAAAAAAAAATAAACAGAACCAG 2330 0.4429 MRLDKIINKATNERVPRKWGTFDEVKRADVATSGVHRKSVQRRESNTPKENLMQATKTCGQESKPLGDVAQSSRLNGSKSNSSCLHCQLRSKPKPQKNRNSHTLRNKTSSAPAVTNQRSRRNYNVTVSLLRCRFALRKMQENKDPAIKLFGQKIPFPGEPDAPPIAAAAESASPPPSEQEDFADSEAEDDKDKDPRAEKVSEKTKEADTPPNAADSKKIPVGVQNPNAEEESAKSKTGKSENDQTDTTTTTATNSQENNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKHSASHYRHITISEALQAARIDAPNGTHPHLLKTNGRVLSFGIDPPICDSMASVLNLAEKKGLNNNTRNGFHTVEDQKNKDSNGDDCSSVSSITVSNEESGKSTSQESLVPTNNGFIHHVPCISTVPWPYPWNTAVHSAPALCPPGFPMSFYPAAAFWNIPWFPSHSHHSAPRSPSSGPNSPTLGKHSRDEDVAKQNHLNEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKDEKDHVVEASPVLRANPAALSRSLNFHENS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00596 605 ProSiteProfiles Zinc finger Dof-type profile. 269 323 IPR003851 GO:0003677|GO:0006355
Pste2g00596 605 MobiDBLite consensus disorder prediction 490 505 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 405 430 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 189 212 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 33 120 - -
Pste2g00596 605 ProSitePatterns Zinc finger Dof-type signature. 271 307 IPR003851 GO:0003677|GO:0006355
Pste2g00596 605 PANTHER CYCLIC DOF FACTOR 2 139 605 IPR045174 GO:0003700|GO:0006355
Pste2g00596 605 MobiDBLite consensus disorder prediction 242 259 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 386 430 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 102 120 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 151 265 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 46 89 - -
Pste2g00596 605 Pfam Dof domain, zinc finger 266 323 IPR003851 GO:0003677|GO:0006355
Pste2g00596 605 MobiDBLite consensus disorder prediction 506 523 - -
Pste2g00596 605 MobiDBLite consensus disorder prediction 489 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00596 Pste-Chr2 5720535 5723864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00596 139 603 C2C2-Dof Transcription Factor Family AT3G47500 50.104 3.92e-131 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste2g00596 zf-Dof 1.9e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02582 6 13201807 13210332 Pste2g00596 2 5720535 5723864 ECH
Pste3g00305 3 1505580 1508451 Pste2g00596 2 5720535 5723864 ECH
Pste2g00596 2 5720535 5723864 Pste2g00596 2 5720535 5723864 ECH