Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00399 ATGCAGGAAATACACTCCATCGGCGGCGGAAGGTTCTTCGGCGGCGGTGGCGACCGCAGGTTGAGGCCGCACCACCAGAGCCACCACCAGCCGCTGAAATGCCCCCGCTGCGACTCACTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAAAACTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGTGGCTGCCGCAAATCCAAACGCTCCAGCAAACCCAAAACCACCGCCAACAACGCTACCTCTTCCTCGGAAAATGCTCCGGCAACCGCGTCAACACCGCCGCCGCCGCCGGAGCCGAACTCGAACTCCCACTCCAGCAGCGAAAGCTCGACTTTAACCGTCGCGGCCACGGAAGCCATGTCGGCGCCGACATCAAACGCGGCGTCGAACAACGTTCTTTTGCTCGAAAACAACGTTCGCGAGTCGAAGATTTTCCCCTCTTTGGACAACAGTGGGATTTTCACCGATATGGGAAGCCTCACCGGCCTCATCAATTCCAATAACGAACCGTTGGGCTTTGGGCTTTCGAATGATAATAATAATAACAACAACAACATGCTCGACGCCACGACGTCGTTTCGCTTCGGAGTTACTCATGACCAGGTGCAAGCGGCCCCAGGTGGAGGCCATGGTCCGTGGCAGCAAGAGCAGAACCATCAGGAGTTTGGTACGGCGTCGTTTCTCAATCACACGGTGCCGCTTGAGTTTTCTTCTTCGCAGCAGAAGACTGGGTTTGGATCGTTGGATTGGCAACCCGGTGTGGATCAAGGTTTGTTTGATCTTCCCAATACCGTTGATCAACCGTACTGGTCCCACTCTCATTGGTCTGATCAAGATAATCCTTCTCTCTTTCATCTTCCCTGA 918 0.5545 MQEIHSIGGGRFFGGGGDRRLRPHHQSHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKTTANNATSSSENAPATASTPPPPPEPNSNSHSSSESSTLTVAATEAMSAPTSNAASNNVLLLENNVRESKIFPSLDNSGIFTDMGSLTGLINSNNEPLGFGLSNDNNNNNNNMLDATTSFRFGVTHDQVQAAPGGGHGPWQQEQNHQEFGTASFLNHTVPLEFSSSQQKTGFGSLDWQPGVDQGLFDLPNTVDQPYWSHSHWSDQDNPSLFHLP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00399 305 MobiDBLite consensus disorder prediction 76 132 - -
Pste2g00399 305 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Pste2g00399 305 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Pste2g00399 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 217 IPR045174 GO:0003700|GO:0006355
Pste2g00399 305 MobiDBLite consensus disorder prediction 1 33 - -
Pste2g00399 305 Pfam Dof domain, zinc finger 30 86 IPR003851 GO:0003677|GO:0006355
Pste2g00399 305 MobiDBLite consensus disorder prediction 90 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00399 Pste-Chr2 3471027 3471944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00399 18 302 C2C2-Dof Transcription Factor Family AT5G60850 39.016 1.56e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste2g00399 zf-Dof 4.3e-33 No_clan