Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g00341 ATGTATAGCACGTCCCTCTTGCATTGTTGTTTTGTAGATTACATTGAGAACAAAATGACAAAACTAAAAGTTAATCAGCTGAATCAATTAAGGGACATTTTTGAAAGATTTGACACGGATTCAGATGGAAGCCTAACAATTTTGGAGGTAGGGGCACTCCTTAGGTCATTGGGGCTAAAACCGTCAGGTGACCAAATCGATGTTTTGTTAGCCAACATGGACTCAAATGGCAATGGTTTTGTGGAGTTTGATGAGTTGGTAGATGCAATATTGCATGACATAAGTGCAGAGATGTTGTTGAACCAAGAAACGCTTCTTGGGGTGTTCAAATGTTTTGACCGTGATGGGAATGGTTACATAACAGCAGCAGAATTAGCAGGGACAATGGCCAAAATGGGTCAACCCCTTACATATAGAGAGCTCACAGAGATGATCACAGAAGCTGACACAGATGGTGATGGGGTCATTAGTTTCAATGAGTTTGCCACTGTCATGAGTAGGTCAGCCTCTAACTTATTAGGCCTTGAATTCTTGTGA 537 0.4115 MYSTSLLHCCFVDYIENKMTKLKVNQLNQLRDIFERFDTDSDGSLTILEVGALLRSLGLKPSGDQIDVLLANMDSNGNGFVEFDELVDAILHDISAEMLLNQETLLGVFKCFDRDGNGYITAAELAGTMAKMGQPLTYRELTEMITEADTDGDGVISFNEFATVMSRSASNLLGLEFL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g00341 178 ProSiteProfiles EF-hand calcium-binding domain profile. 25 60 IPR002048 GO:0005509
Pste2g00341 178 Pfam EF-hand domain pair 104 165 IPR002048 GO:0005509
Pste2g00341 178 Pfam EF-hand domain pair 28 89 IPR002048 GO:0005509
Pste2g00341 178 ProSitePatterns EF-hand calcium-binding domain. 74 86 IPR018247 -
Pste2g00341 178 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Pste2g00341 178 ProSiteProfiles EF-hand calcium-binding domain profile. 61 96 IPR002048 GO:0005509
Pste2g00341 178 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Pste2g00341 178 Gene3D - 10 120 - -
Pste2g00341 178 CDD EFh 29 90 IPR002048 GO:0005509
Pste2g00341 178 ProSitePatterns EF-hand calcium-binding domain. 38 50 IPR018247 -
Pste2g00341 178 SMART efh_1 140 168 IPR002048 GO:0005509
Pste2g00341 178 SMART efh_1 65 93 IPR002048 GO:0005509
Pste2g00341 178 SMART efh_1 29 57 IPR002048 GO:0005509
Pste2g00341 178 SMART efh_1 104 132 IPR002048 GO:0005509
Pste2g00341 178 ProSitePatterns EF-hand calcium-binding domain. 149 161 IPR018247 -
Pste2g00341 178 Gene3D - 121 173 - -
Pste2g00341 178 CDD EFh 108 166 IPR002048 GO:0005509
Pste2g00341 178 PANTHER CALCIUM BINDING PROTEIN 102 165 - -
Pste2g00341 178 SUPERFAMILY EF-hand 17 167 IPR011992 -
Pste2g00341 178 FunFam Probable calcium-binding protein CML15 15 95 - -
Pste2g00341 178 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g00341 Pste-Chr2 2649849 2650385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g00341 25 176 EF-hand Containing Proteins AT1G18530 73.684 2.58e-80 233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g00341 2 2649849 2650385 Pste2g00341 2 2649849 2650385 ECH