Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04340 GTTTCTCTCTCCTCGTTTTACCTATGCTTACGCTCTTCTCTCTCTTTAATTTGAATATCTTGATCAGCTTGCAAACGCGCATTTTCATCACAGTTTGTTGTAAAACTAAAACCCACCAAAACCTTTCTCTCTCTCTTTCTTAGTTCGTTCTTTTTCTTCTTCTCTAATGCCCTTTTGATCATTCCATCGTTCCAGGGTAGCCAGTGATTGCTTTTGCTTGCATGGCATCAAATAATCTATTCTTTGATGATATACGAAGCAAAGCCGATGTTGATCCTCCTCAAAATGATGAATCAACAGATGTTGGAGAATCAGTAAACGATCCTGCTCAAACTGCTCTTAAACCTAATGGCGCTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTATGCCTGAATGCCATGTACCCACCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCTTGGCACTCGAGAAAGTGGCTGCATCATTAGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCAGTGGGATATATCCATATTACAGCAAGCTAAAGCATGAATCACAATGTGCATTTAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTCGCCCATCTTAAAGATGACCACAAAGTTGACATGCATAATGGTAGCACTTTTAATCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTGTTCAGTTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGAAGGAAGCTGATGTGGCAGGGAGTGCCTAGGAGCATCAGGGACAGCCACCGCAAGGTTCGCGACAGCTTTGATGGTCTCATCATTCAGAGGAACATGGCCCTCTTTTTCTCCGGCGGTGACTGGAAGGAACTGAAGCTAAGGGTTACTGGTAGGATTTGGAAGGAACAGTGAAGGAGAGACATGTCCTTCAACCTGCAATTACATAGGATGATAGTTTGTAGTGAAACTTGTTTGTTGTAGTGATATGTACCTTCTGGTCATGTAATTGTGTTTTGTCACTAAGCAAACACTCTTTGCTTATCCTTGCATCAAATACATGAACAGGAAGTTGTACCTCTTATCATTATGATAATTTTGCAATAGAGATGTAGAATCTTAACTTGCCCCACATATATTCTTTTATTTCTACGAATGTTTATGATTGAGAGCACTTGAGAAAATGTGGCAAGCAAAAAAACTACTATTAAGAACATGAAAATTAAACTGTA 1453 0.4067 MASNNLFFDDIRSKADVDPPQNDESTDVGESVNDPAQTALKPNGAVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCSGIYPYYSKLKHESQCAFRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKLMWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDWKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04340 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Pste1g04340 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Pste1g04340 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 303 - -
Pste1g04340 304 SUPERFAMILY RING/U-box 48 96 - -
Pste1g04340 304 MobiDBLite consensus disorder prediction 1 44 - -
Pste1g04340 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Pste1g04340 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pste1g04340 304 MobiDBLite consensus disorder prediction 24 44 - -
Pste1g04340 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Pste1g04340 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Pste1g04340 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Pste1g04340 304 CDD RING-HC_SIAHs 54 92 - -
Pste1g04340 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Pste1g04340 304 SUPERFAMILY TRAF domain-like 109 301 - -
Pste1g04340 304 CDD Sina 170 298 - -
Pste1g04340 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04340 Pste-Chr1 28814065 28818397 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g04340 1 28814065 28818397 Pste1g04340 1 28814065 28818397 ECH
Pste3g00796 3 4919181 4924010 Pste1g04340 1 28814065 28818397 PCT