Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g04299 | CGTTTCTAAACCAAAAAGGAAGAAAAATAACACTTAAAACCCTAAACCCTTGCGTCCCTCATTTGGTCGCCGTTCACCGTAAAGCCACCCGCCGTCGCCCCAAGTCGTCACCGCAAGTCGGCGGCGCCACCGTCGAATCAAGCCACTCCGTCCACCGTCGAACCACCCATAGTTGAAACTCCTCGTTCACAGATAGAAGAATAATTGGTTGAGAAGAGAAATGGGAAAGAAGAACAAAGTGAAGGAAAATGGTGGCAAAGAGCATTGCCCCTCAACACTTTTCGTCTCCAACTTGCCGTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAAGTTGGACCTGTCAGGCGATGCTTCATGGTGACACAGAAAGGGTCTGCTCAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGATGCTAATCGTGCTATTGAGCAGAAGAATGGTTCATCTGTCGGAGGCCGGAAAATTGTAGTGAAACATGCAATGCCTCGTCCTCCCCGTGAAGAACGACAATCAAAACCAAGTCAAGGCAAGACAGATGATCTCACAACACCAAAAGATGATGATGAAGACAGCAAATTATCTGGAGCTGAGAAGCATGTTTCAGTTTCGAAGGGAGAAGATGTACGAGTTGCTAGTAAAGAAAAAAACTCAAGGAAACCCACAGAAACAAAAAAATCAGCTCTTTGTAATGATGTAGCTGATGAAGGTGGTTGCTCTGAAAAACAGAGGGTTGCTAGAACAGTTATACTTGGTGGTCTCATAAATTCTGATATGGCTGAAGAAGTTCACCGCCAAGCCAGAGAGATTGGCACTGTGTGTTCTATTAAGTACCCCCTTTCAAGGAAAGATCTTGAGCAACATGGTCTCATGCAAGATGGCTGTACTATGGATGCTTCATCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTACTGTTGCAACATTACATAAAAAAGAGATAGGAGGGGGAGCTGTTTGGGCGCGTCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCAAATGATAGTGAAATAAGAAATATGTTTTTGTCTGCTGGGTATGTGTGGGATGTATTTATTCCACAAAAGGCTGGTCTGTCTAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGAAAATGCTATTGAAAAGCTCAATGGATCAAAGTTTGCAAAACGACACATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAACAGTGATACAAATGATGCTGTTGCCTCAGAGGAAGGGCAACAAAACATGAGTGATGAGGAAAATACCGAGGAAGATGATAAAATATCCAGTCAAGGAGATGATAATGATACGGACTACTCTAGTTCCTCAGAGGATGAAGGTGCTCCTCCTGAAGTTAATTTTGATAAGGAAGCAGATATTGCAAGAAAGGTTCTGAACAACTTGCTTACATCCTCGAGCAAAGGAACATCTGTAAAAAATGATTCTACATTGTCCAATGAAAACAAGGAGTCAAAATCTGATAAAATTGATACTGATGGAAAAGCATCTAACAAGTCTGAAAAGGTTTTGGGTGATGCTAAGCCTGAAATTTCCAGCAGAAACAACTTATCAAATCATAAGGAAACAGAAGATGATTTGCAGAGAACAGTTTTTATAAGAAATCTTCCCTTTGAATGTGATAACGAAGAAGTGAAACAACGATTTTCTGGATTTGGGGAAGTAGAATACTTTGCTCCTGTTCTTCACCAAGTCACCAAGCGACCAAGAGGGACTGGTTTTCTAAAATTTAAAACTGTAGAAGCAGCTAATATTGCAATTTCAACTGCTAATGCTGCTTCTGGGATGGGTATTTTACTGAAGGGTAGACCATTGAAAGTTTTAAATGCTTTGGATAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCAAGACCACCGGAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAAGGAACTACAGCTGCTGAGGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTCATTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATTTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGAAAAGAAAGGACAGGTTGCTCAAGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCCGAGCATCAACATGCCCTTGTGGCTTTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACATCGACCAATCGTGGAGTTTGCTCTTGATAATGTTCAGACACTTAAACTTCGCAAGGCAAAGCTACAATCTCAGCAGCAGGCTCCTCGAGATGACAACAATGCTGAGGGTAATGCCAAACCTGGCACAGTAGAAGTTCAAACGCATGTAAAGGACAGAAAACGAAAATCTCGAGAGCACGACAAACCTGCAAAGGACACAATACAGAATACAAATAGTGAATCAGGTGGTAAAGTGGCAAATGACAAATCACCTCAAGGACAAAAATCTAAAAGACAGAAAGGCAACAATAAGGGTAAAATGACACTGAAAGAAAATCCAGAAGCCTTGTCAATGAAGCCAAAGAATAACCAAAATGGCCAGAATAATGGTAGGGCATCTCTTGAAGGTCAAAACACTGTCACTGACACCCATGGAAGAAAATCAGGGAATAAAGATGATATGGGGTTTAAAAAAAGGAAAATGCAAAACCAAGTGCAAGAAGCAGGTCAAAAGGTTTCTAAGAAACGACCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATACAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGGGGAGAAAAGACCTTCTAAACAGCTTAGGAAATGGTTCCAATCATAGTTCACTGTTTGTTTGATGTGAATTTTGTTACTTGTATTATTTTTTTTGCTTCCGAAAGTTTAAGCAATTTAACCATAGTTGCACCATCTTATATTGAGCTTCCTTCCTGATTTTAAATTTAAAATGTTAACTTCCGGCTGGTATTGTTTTGTGTTTGAGTAATGT | 3235 | 0.4046 | MGKKNKVKENGGKEHCPSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIEQKNGSSVGGRKIVVKHAMPRPPREERQSKPSQGKTDDLTTPKDDDEDSKLSGAEKHVSVSKGEDVRVASKEKNSRKPTETKKSALCNDVADEGGCSEKQRVARTVILGGLINSDMAEEVHRQAREIGTVCSIKYPLSRKDLEQHGLMQDGCTMDASSVLYTSVKSARATVATLHKKEIGGGAVWARQLGGEGSKTQKWKLIVRNLPFKANDSEIRNMFLSAGYVWDVFIPQKAGLSKGFAFVKFTCKQDAENAIEKLNGSKFAKRHIAVDWAVPKKIFNSDTNDAVASEEGQQNMSDEENTEEDDKISSQGDDNDTDYSSSSEDEGAPPEVNFDKEADIARKVLNNLLTSSSKGTSVKNDSTLSNENKESKSDKIDTDGKASNKSEKVLGDAKPEISSRNNLSNHKETEDDLQRTVFIRNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANIAISTANAASGMGILLKGRPLKVLNALDKKSAHDKELEKAKNEVQDHRNLYLAKEGLILEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKNEKKGQVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQAPRDDNNAEGNAKPGTVEVQTHVKDRKRKSREHDKPAKDTIQNTNSESGGKVANDKSPQGQKSKRQKGNNKGKMTLKENPEALSMKPKNNQNGQNNGRASLEGQNTVTDTHGRKSGNKDDMGFKKRKMQNQVQEAGQKVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQENGEKRPSKQLRKWFQS | 949 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g04299 | 949 | Gene3D | - | 642 | 737 | IPR012677 | - | |
| Pste1g04299 | 949 | CDD | RRM4_RBM28_like | 643 | 740 | - | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 868 | 883 | - | - | |
| Pste1g04299 | 949 | Gene3D | - | 2 | 132 | IPR012677 | - | |
| Pste1g04299 | 949 | Gene3D | - | 262 | 397 | IPR012677 | - | |
| Pste1g04299 | 949 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 96 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | CDD | RRM3_RBM28_like | 491 | 572 | - | - | |
| Pste1g04299 | 949 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 275 | 351 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | SMART | rrm1_1 | 276 | 347 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | SMART | rrm1_1 | 644 | 735 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | SMART | rrm1_1 | 19 | 92 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | SMART | rrm1_1 | 492 | 570 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 749 | 949 | - | - | |
| Pste1g04299 | 949 | FunFam | RNA-binding motif protein 28 | 642 | 737 | - | - | |
| Pste1g04299 | 949 | SUPERFAMILY | RNA-binding domain, RBD | 270 | 353 | IPR035979 | GO:0003676 | |
| Pste1g04299 | 949 | CDD | RRM1_RBM28_like | 19 | 97 | - | - | |
| Pste1g04299 | 949 | SUPERFAMILY | RNA-binding domain, RBD | 634 | 741 | IPR035979 | GO:0003676 | |
| Pste1g04299 | 949 | Gene3D | - | 422 | 588 | IPR012677 | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 840 | 867 | - | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 362 | 408 | - | - | |
| Pste1g04299 | 949 | Coils | Coil | 734 | 754 | - | - | |
| Pste1g04299 | 949 | CDD | RRM2_RBM28_like | 276 | 350 | - | - | |
| Pste1g04299 | 949 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 643 | 751 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 428 | 486 | - | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 441 | 470 | - | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 77 | 159 | - | - | |
| Pste1g04299 | 949 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 491 | 574 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | SUPERFAMILY | RNA-binding domain, RBD | 491 | 663 | IPR035979 | GO:0003676 | |
| Pste1g04299 | 949 | PANTHER | RNA-BINDING MOTIF PROTEIN 14B | 15 | 851 | - | - | |
| Pste1g04299 | 949 | Coils | Coil | 569 | 596 | - | - | |
| Pste1g04299 | 949 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 260 | IPR035979 | GO:0003676 | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 775 | 796 | - | - | |
| Pste1g04299 | 949 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 277 | 344 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 493 | 554 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 89 | IPR000504 | GO:0003723 | |
| Pste1g04299 | 949 | SMART | rrm2_1 | 19 | 92 | IPR003954 | GO:0003676 | |
| Pste1g04299 | 949 | SMART | rrm2_1 | 276 | 347 | IPR003954 | GO:0003676 | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 903 | 943 | - | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 94 | 159 | - | - | |
| Pste1g04299 | 949 | FunFam | - | 2 | 127 | - | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 797 | 821 | - | - | |
| Pste1g04299 | 949 | MobiDBLite | consensus disorder prediction | 372 | 387 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste1g04299 | Pste-Chr1 | 27778434 | 27787333 | Dispersed |